The 2.0 version of rSNPBase

Variant report

Variant rs829660
Chromosome Location chr2:30726765-30726766
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:67 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:30715600-30732800 Weak transcription Hela-S3 cervix
2 chr2:30716000-30727600 Weak transcription Small Intestine intestine
3 chr2:30716000-30728000 Weak transcription Duodenum Smooth Muscle Duodenum
4 chr2:30721200-30727400 Weak transcription NHLF lung
5 chr2:30721400-30728400 Weak transcription Liver Liver
6 chr2:30721400-30739000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
7 chr2:30722000-30727600 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
8 chr2:30724000-30727400 Weak transcription NHDF-Ad bronchial
9 chr2:30724000-30732600 Weak transcription Skeletal Muscle Female skeletal muscle
10 chr2:30724200-30727200 Weak transcription iPS-15b Cell Line embryonic stem cell
11 chr2:30724200-30727600 Weak transcription Sigmoid Colon Sigmoid Colon
12 chr2:30724200-30728000 Weak transcription HepG2 liver
13 chr2:30724200-30728400 Weak transcription Duodenum Mucosa Duodenum
14 chr2:30724200-30728400 Weak transcription K562 blood
15 chr2:30724200-30733400 Weak transcription Fetal Intestine Large intestine
16 chr2:30724200-30733800 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
17 chr2:30724200-30734000 Weak transcription Ovary ovary
18 chr2:30724200-30737400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
19 chr2:30724600-30737400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
20 chr2:30725200-30729000 Enhancers Primary T helper naive cells fromperipheralblood blood
21 chr2:30725200-30729000 Enhancers Primary T helper cells PMA-I stimulated --
22 chr2:30725200-30729000 Enhancers Primary T killer naive cells fromperipheralblood blood
23 chr2:30725400-30728200 Enhancers Primary monocytes fromperipheralblood blood
24 chr2:30725400-30729000 Enhancers Primary T helper memory cells from peripheral blood 2 blood
25 chr2:30725400-30729000 Enhancers Primary T helper naive cells from peripheral blood blood
26 chr2:30725600-30726800 Enhancers Thymus Thymus
27 chr2:30725600-30727000 Enhancers Fetal Thymus thymus
28 chr2:30725600-30727000 Enhancers Dnd41 blood
29 chr2:30725600-30727000 Enhancers GM12878-XiMat blood
30 chr2:30725600-30727200 Enhancers Primary Natural Killer cells fromperipheralblood blood
31 chr2:30725600-30727800 Enhancers Primary T cells fromperipheralblood blood
32 chr2:30725600-30727800 Enhancers Primary hematopoietic stem cells short term culture blood
33 chr2:30725600-30728000 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
34 chr2:30725600-30728800 Enhancers Primary T helper 17 cells PMA-I stimulated --
35 chr2:30725600-30729000 Enhancers Primary T helper cells fromperipheralblood blood
36 chr2:30725600-30729000 Enhancers Primary T killer memory cells from peripheral blood blood
37 chr2:30725600-30729400 Enhancers Primary T regulatory cells fromperipheralblood blood
38 chr2:30725800-30726800 Enhancers Primary hematopoietic stem cells blood
39 chr2:30725800-30727000 Flanking Active TSS Monocytes-CD14+_RO01746 blood
40 chr2:30725800-30728800 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
41 chr2:30726000-30726800 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
42 chr2:30726000-30726800 Enhancers Right Ventricle heart
43 chr2:30726000-30728000 Enhancers Primary T cells effector/memory enriched fromperipheralblood blood
44 chr2:30726000-30728200 Enhancers Fetal Stomach stomach
45 chr2:30726000-30728800 Enhancers Fetal Lung lung
46 chr2:30726200-30726800 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Male --
47 chr2:30726200-30726800 Weak transcription Right Atrium heart
48 chr2:30726200-30727400 Weak transcription Rectal Mucosa Donor 29 rectum
49 chr2:30726200-30732400 Weak transcription Left Ventricle heart
50 chr2:30726200-30734200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell

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Last update: Aug 31, 2015