Variant report

Variant	rs2609017
Chromosome Location	chr3:50896996-50896997
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11923336	0.88[AFR][1000 genomes]
rs13092850	0.88[AFR][1000 genomes]
rs2355701	0.98[AFR][1000 genomes]
rs2459450	0.94[AFR][1000 genomes]
rs2609014	0.98[AFR][1000 genomes]
rs2609015	1.00[AFR][1000 genomes]
rs2609027	1.00[AFR][1000 genomes]
rs2609030	1.00[AFR][1000 genomes]
rs2675775	0.91[AFR][1000 genomes]
rs2675781	0.96[AFR][1000 genomes]
rs2675785	0.94[AFR][1000 genomes]
rs2675797	0.90[AFR][1000 genomes]
rs2675815	0.86[AFR][1000 genomes]
rs2675823	1.00[AFR][1000 genomes]
rs2675824	0.89[AFR][1000 genomes]
rs2675826	1.00[AFR][1000 genomes]
rs4401355	0.87[AFR][1000 genomes]
rs4423762	0.91[AFR][1000 genomes]
rs4440121	0.94[AFR][1000 genomes]
rs4688675	0.88[AFR][1000 genomes]
rs4688717	0.84[AFR][1000 genomes]
rs6807662	0.91[AFR][1000 genomes]
rs7373700	0.85[AFR][1000 genomes]
rs73833251	0.89[AFR][1000 genomes]
rs7433944	0.85[AFR][1000 genomes]
rs9818443	0.83[AFR][1000 genomes]
rs9854588	0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491647	chr3:50856276-51245158	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv10271	chr3:50890189-50913514	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:50886000-50899800	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr3:50889200-50899800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr3:50891800-50899600	Weak transcription	Brain Cingulate Gyrus	brain
4	chr3:50896000-50897200	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr3:50896200-50897200	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr3:50896400-50897000	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr3:50896600-50897400	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr3:50896800-50897200	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr3:50896800-50898000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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