Variant report

Variant	rs4440121
Chromosome Location	chr3:50931317-50931318
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 92 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:89)

rs_ID	r²[population]
rs1038415	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11130258	0.83[AMR][1000 genomes]
rs11923336	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13092850	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13325937	1.00[AMR][1000 genomes]
rs1552255	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1552256	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17051404	1.00[EUR][1000 genomes]
rs1843073	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2129069	1.00[AMR][1000 genomes]
rs2262848	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2355337	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2355701	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2459450	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2608994	1.00[AMR][1000 genomes]
rs2608996	1.00[AMR][1000 genomes]
rs2609004	1.00[AMR][1000 genomes]
rs2609014	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2609015	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2609017	0.94[AFR][1000 genomes]
rs2609027	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2609030	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2675775	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2675781	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2675785	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2675797	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2675798	1.00[AMR][1000 genomes]
rs2675815	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2675823	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2675824	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2675826	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2675833	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs407164	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs421689	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4234694	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4234695	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4267639	1.00[EUR][1000 genomes]
rs4340700	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4401355	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4423762	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4688675	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4688704	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4688717	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56198179	1.00[EUR][1000 genomes]
rs56341000	1.00[EUR][1000 genomes]
rs56413944	1.00[EUR][1000 genomes]
rs57756789	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57987466	1.00[EUR][1000 genomes]
rs58911362	1.00[EUR][1000 genomes]
rs59337835	1.00[EUR][1000 genomes]
rs59340349	1.00[EUR][1000 genomes]
rs59749820	1.00[EUR][1000 genomes]
rs59944295	1.00[EUR][1000 genomes]
rs60132317	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60209025	1.00[EUR][1000 genomes]
rs60420261	1.00[EUR][1000 genomes]
rs60455882	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61032466	1.00[EUR][1000 genomes]
rs621975	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs628865	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6446223	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6446242	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6446244	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6446246	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs650473	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6768539	1.00[EUR][1000 genomes]
rs6807662	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7373700	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73833231	1.00[EUR][1000 genomes]
rs73833232	1.00[EUR][1000 genomes]
rs73833239	1.00[EUR][1000 genomes]
rs73833247	1.00[EUR][1000 genomes]
rs73833251	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73833935	1.00[EUR][1000 genomes]
rs73833947	1.00[EUR][1000 genomes]
rs73833949	1.00[EUR][1000 genomes]
rs73833952	1.00[EUR][1000 genomes]
rs73833954	1.00[EUR][1000 genomes]
rs7433944	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7642578	1.00[EUR][1000 genomes]
rs7650772	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7653228	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs936714	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9818443	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9821597	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9840476	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9851304	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9854588	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9857033	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491647	chr3:50856276-51245158	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1004881	chr3:50900793-51032918	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv536568	chr3:50900793-51032918	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:50927200-50931800	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr3:50928600-50931400	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr3:50929000-50931400	Enhancers	H9 Cell Line	embryonic stem cell
4	chr3:50929000-50932000	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr3:50930000-50931400	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr3:50930400-50931800	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr3:50931000-50931800	Enhancers	HUES6 Cell Line	embryonic stem cell

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