Variant report
| Variant | rs13325937 |
|---|---|
| Chromosome Location | chr3:50774562-50774563 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:69)
| rs_ID | r2[population] |
|---|---|
| rs1038415 | 0.80[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs107457 | 0.83[AMR][1000 genomes] |
| rs11130258 | 0.83[AMR][1000 genomes] |
| rs11923336 | 1.00[AMR][1000 genomes] |
| rs13092850 | 1.00[AMR][1000 genomes] |
| rs1552255 | 0.80[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs1552256 | 0.83[AMR][1000 genomes] |
| rs1843073 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs2129069 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs2262848 | 1.00[AMR][1000 genomes] |
| rs2355337 | 1.00[AMR][1000 genomes] |
| rs2355701 | 1.00[AMR][1000 genomes] |
| rs2459450 | 1.00[AMR][1000 genomes] |
| rs2608994 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2608996 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2609004 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2609014 | 1.00[AMR][1000 genomes] |
| rs2609015 | 1.00[AMR][1000 genomes] |
| rs2609027 | 1.00[AMR][1000 genomes] |
| rs2609030 | 1.00[AMR][1000 genomes] |
| rs2675775 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2675781 | 1.00[AMR][1000 genomes] |
| rs2675785 | 1.00[AMR][1000 genomes] |
| rs2675797 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2675798 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2675815 | 1.00[AMR][1000 genomes] |
| rs2675823 | 1.00[AMR][1000 genomes] |
| rs2675824 | 1.00[AMR][1000 genomes] |
| rs2675826 | 1.00[AMR][1000 genomes] |
| rs2675833 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs407164 | 1.00[AMR][1000 genomes] |
| rs421689 | 1.00[AMR][1000 genomes] |
| rs4234694 | 1.00[AMR][1000 genomes] |
| rs4234695 | 1.00[AMR][1000 genomes] |
| rs4340700 | 1.00[AMR][1000 genomes] |
| rs4401355 | 1.00[AMR][1000 genomes] |
| rs4423762 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs4440121 | 1.00[AMR][1000 genomes] |
| rs4688675 | 1.00[AMR][1000 genomes] |
| rs4688704 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs4688717 | 0.83[AMR][1000 genomes] |
| rs55723661 | 1.00[EUR][1000 genomes] |
| rs57077411 | 1.00[EUR][1000 genomes] |
| rs57756789 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs58231937 | 1.00[EUR][1000 genomes] |
| rs59486246 | 1.00[EUR][1000 genomes] |
| rs60132317 | 0.83[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs60455882 | 1.00[AMR][1000 genomes] |
| rs621975 | 1.00[AMR][1000 genomes] |
| rs628865 | 1.00[AMR][1000 genomes] |
| rs6446223 | 1.00[AMR][1000 genomes] |
| rs6446242 | 1.00[AMR][1000 genomes] |
| rs6446244 | 1.00[AMR][1000 genomes] |
| rs6446246 | 1.00[AMR][1000 genomes] |
| rs650473 | 1.00[AMR][1000 genomes] |
| rs6807662 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7373700 | 1.00[AMR][1000 genomes] |
| rs73833251 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7433944 | 1.00[AMR][1000 genomes] |
| rs7650772 | 1.00[AMR][1000 genomes] |
| rs7653228 | 1.00[AMR][1000 genomes] |
| rs936714 | 0.80[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9818443 | 1.00[AMR][1000 genomes] |
| rs9821597 | 1.00[AMR][1000 genomes] |
| rs9825283 | 0.80[AFR][1000 genomes] |
| rs9840476 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9851304 | 1.00[AMR][1000 genomes] |
| rs9854588 | 1.00[AMR][1000 genomes] |
| rs9857033 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:50773400-50775400 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
