Variant report
| Variant | rs58231937 |
|---|---|
| Chromosome Location | chr3:50799712-50799713 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:66)
| rs_ID | r2[population] |
|---|---|
| rs13325937 | 1.00[EUR][1000 genomes] |
| rs17051012 | 1.00[AMR][1000 genomes] |
| rs17051016 | 1.00[AMR][1000 genomes] |
| rs17051017 | 1.00[AMR][1000 genomes] |
| rs17051404 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs2608994 | 1.00[EUR][1000 genomes] |
| rs2608996 | 1.00[EUR][1000 genomes] |
| rs2609004 | 1.00[EUR][1000 genomes] |
| rs2675775 | 1.00[EUR][1000 genomes] |
| rs2675797 | 1.00[EUR][1000 genomes] |
| rs2675798 | 1.00[EUR][1000 genomes] |
| rs4423762 | 1.00[EUR][1000 genomes] |
| rs4560294 | 1.00[AMR][1000 genomes] |
| rs55723661 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs55731480 | 1.00[AMR][1000 genomes] |
| rs55852678 | 1.00[AMR][1000 genomes] |
| rs56112107 | 1.00[AMR][1000 genomes] |
| rs56198179 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs56341000 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs56413944 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs57077411 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs57155820 | 1.00[AMR][1000 genomes] |
| rs57867785 | 1.00[AMR][1000 genomes] |
| rs57987466 | 0.80[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs58225351 | 1.00[EUR][1000 genomes] |
| rs58803807 | 1.00[EUR][1000 genomes] |
| rs58854038 | 1.00[AMR][1000 genomes] |
| rs58911362 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs59065723 | 1.00[AMR][1000 genomes] |
| rs59337835 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs59340349 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs59486246 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs59749820 | 1.00[AMR][1000 genomes] |
| rs59944295 | 1.00[AMR][1000 genomes] |
| rs60209025 | 1.00[AMR][1000 genomes] |
| rs60420261 | 1.00[AMR][1000 genomes] |
| rs60455882 | 0.87[AFR][1000 genomes] |
| rs61032466 | 0.80[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs61455710 | 1.00[AMR][1000 genomes] |
| rs6768539 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6789552 | 1.00[AMR][1000 genomes] |
| rs6805545 | 1.00[EUR][1000 genomes] |
| rs6807662 | 1.00[EUR][1000 genomes] |
| rs73833231 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73833232 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73833239 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73833242 | 1.00[AMR][1000 genomes] |
| rs73833247 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73833248 | 1.00[AMR][1000 genomes] |
| rs73833251 | 1.00[EUR][1000 genomes] |
| rs73833404 | 1.00[AMR][1000 genomes] |
| rs73833406 | 1.00[AMR][1000 genomes] |
| rs73833886 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73833935 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73833940 | 1.00[AMR][1000 genomes] |
| rs73833943 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73833947 | 1.00[AMR][1000 genomes] |
| rs73833949 | 1.00[AMR][1000 genomes] |
| rs73833952 | 1.00[AMR][1000 genomes] |
| rs73833954 | 1.00[AMR][1000 genomes] |
| rs73835533 | 1.00[AMR][1000 genomes] |
| rs73835535 | 1.00[AMR][1000 genomes] |
| rs73835537 | 1.00[AMR][1000 genomes] |
| rs73835538 | 1.00[AMR][1000 genomes] |
| rs7642578 | 1.00[AMR][1000 genomes] |
| rs9311462 | 1.00[EUR][1000 genomes] |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:50796000-50801600 | Weak transcription | Brain Substantia Nigra | brain |
