Variant report

Variant	rs73833940
Chromosome Location	chr3:50900443-50900444
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs17051404	1.00[AMR][1000 genomes]
rs55723661	1.00[AMR][1000 genomes]
rs55731480	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55852678	1.00[AMR][1000 genomes]
rs56112107	1.00[AMR][1000 genomes]
rs56198179	1.00[AMR][1000 genomes]
rs56341000	1.00[AMR][1000 genomes]
rs56413944	1.00[AMR][1000 genomes]
rs57077411	1.00[AMR][1000 genomes]
rs57155820	1.00[AMR][1000 genomes]
rs57867785	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57987466	1.00[AMR][1000 genomes]
rs58231937	1.00[AMR][1000 genomes]
rs58911362	1.00[AMR][1000 genomes]
rs59337835	1.00[AMR][1000 genomes]
rs59340349	1.00[AMR][1000 genomes]
rs59486246	1.00[AMR][1000 genomes]
rs59749820	1.00[AMR][1000 genomes]
rs59944295	1.00[AMR][1000 genomes]
rs60209025	1.00[AMR][1000 genomes]
rs60420261	1.00[AMR][1000 genomes]
rs61032466	1.00[AMR][1000 genomes]
rs6768539	1.00[AMR][1000 genomes]
rs6789552	1.00[AMR][1000 genomes]
rs73833231	1.00[AMR][1000 genomes]
rs73833232	1.00[AMR][1000 genomes]
rs73833239	1.00[AMR][1000 genomes]
rs73833242	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73833247	1.00[AMR][1000 genomes]
rs73833248	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73833404	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73833406	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73833886	1.00[AMR][1000 genomes]
rs73833935	1.00[AMR][1000 genomes]
rs73833943	1.00[AMR][1000 genomes]
rs73833947	1.00[AMR][1000 genomes]
rs73833949	1.00[AMR][1000 genomes]
rs73833952	1.00[AMR][1000 genomes]
rs73833954	1.00[AMR][1000 genomes]
rs7642578	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491647	chr3:50856276-51245158	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv10271	chr3:50890189-50913514	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:50897400-50910000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr3:50898400-50910200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr3:50899600-50900800	Enhancers	Brain Hippocampus Middle	brain
4	chr3:50899800-50900600	Enhancers	Right Ventricle	heart
5	chr3:50900000-50900800	Enhancers	Left Ventricle	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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