Variant report

Variant	rs55731480
Chromosome Location	chr3:51030953-51030954
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs17051404	1.00[AMR][1000 genomes]
rs55723661	1.00[AMR][1000 genomes]
rs56198179	1.00[AMR][1000 genomes]
rs56341000	1.00[AMR][1000 genomes]
rs56413944	1.00[AMR][1000 genomes]
rs57077411	1.00[AMR][1000 genomes]
rs57867785	1.00[AMR][1000 genomes]
rs58231937	1.00[AMR][1000 genomes]
rs58911362	1.00[AMR][1000 genomes]
rs59486246	1.00[AMR][1000 genomes]
rs59749820	1.00[AMR][1000 genomes]
rs59944295	1.00[AMR][1000 genomes]
rs60209025	1.00[AMR][1000 genomes]
rs60420261	1.00[AMR][1000 genomes]
rs62257830	0.87[AFR][1000 genomes]
rs73833247	1.00[AMR][1000 genomes]
rs73833248	1.00[AMR][1000 genomes]
rs73833886	1.00[AMR][1000 genomes]
rs73833935	1.00[AMR][1000 genomes]
rs73833940	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73833943	1.00[AMR][1000 genomes]
rs73833947	1.00[AMR][1000 genomes]
rs73833949	1.00[AMR][1000 genomes]
rs73833952	1.00[AMR][1000 genomes]
rs73833954	1.00[AMR][1000 genomes]
rs7642578	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491647	chr3:50856276-51245158	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1004881	chr3:50900793-51032918	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv536568	chr3:50900793-51032918	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:51030000-51033600	Enhancers	Liver	Liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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