Variant report

Variant	rs73833886
Chromosome Location	chr3:50856518-50856519
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs17051012	1.00[AMR][1000 genomes]
rs17051016	1.00[AMR][1000 genomes]
rs17051017	1.00[AMR][1000 genomes]
rs17051404	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55723661	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55731480	1.00[AMR][1000 genomes]
rs55852678	1.00[AMR][1000 genomes]
rs56112107	1.00[AMR][1000 genomes]
rs56198179	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56341000	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56413944	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57077411	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57155820	1.00[AMR][1000 genomes]
rs57867785	1.00[AMR][1000 genomes]
rs57987466	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58231937	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58854038	1.00[AMR][1000 genomes]
rs58911362	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59065723	1.00[AMR][1000 genomes]
rs59337835	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59340349	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59486246	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59749820	1.00[AMR][1000 genomes]
rs59944295	1.00[AMR][1000 genomes]
rs60209025	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60420261	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60455882	0.89[AFR][1000 genomes]
rs61032466	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61455710	1.00[AMR][1000 genomes]
rs6768539	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6789552	1.00[AMR][1000 genomes]
rs73833231	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73833232	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73833239	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73833242	1.00[AMR][1000 genomes]
rs73833247	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73833248	1.00[AMR][1000 genomes]
rs73833404	1.00[AMR][1000 genomes]
rs73833406	1.00[AMR][1000 genomes]
rs73833935	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73833940	1.00[AMR][1000 genomes]
rs73833943	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73833947	1.00[AMR][1000 genomes]
rs73833949	1.00[AMR][1000 genomes]
rs73833952	1.00[AMR][1000 genomes]
rs73833954	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73835533	1.00[AMR][1000 genomes]
rs73835535	1.00[AMR][1000 genomes]
rs73835537	1.00[AMR][1000 genomes]
rs73835538	1.00[AMR][1000 genomes]
rs7428650	0.80[AFR][1000 genomes]
rs7642578	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491647	chr3:50856276-51245158	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:50853000-50857200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
2	chr3:50853600-50856600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr3:50854000-50857200	Enhancers	H1 Cell Line	embryonic stem cell
4	chr3:50855000-50857000	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr3:50855200-50856600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
6	chr3:50855600-50857000	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr3:50856000-50856800	Enhancers	Brain Substantia Nigra	brain
8	chr3:50856000-50863200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr3:50856200-50857200	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr3:50856200-50857200	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr3:50856200-50863400	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr3:50856400-50857200	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr3:50856400-50857400	Enhancers	HUES6 Cell Line	embryonic stem cell

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