Variant report

Variant	rs59340349
Chromosome Location	chr3:50724975-50724976
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	KAP1	chr3:50724638-50725047	U2OS	brain:	n/a	n/a
2	SETDB1	chr3:50724620-50724980	U2OS	brain:	n/a	n/a

Variant related genes	Relation type
ENSG00000228337	TF binding region

Extended variants
information (count: 98 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:98)

rs_ID	r²[population]
rs1038415	1.00[EUR][1000 genomes]
rs107457	1.00[EUR][1000 genomes]
rs11923336	1.00[EUR][1000 genomes]
rs13092850	1.00[EUR][1000 genomes]
rs1552255	1.00[EUR][1000 genomes]
rs1552256	1.00[EUR][1000 genomes]
rs17051012	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17051016	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17051017	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17051404	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1843073	1.00[EUR][1000 genomes]
rs2232251	1.00[EUR][1000 genomes]
rs2262848	1.00[EUR][1000 genomes]
rs2355337	1.00[EUR][1000 genomes]
rs2355701	1.00[EUR][1000 genomes]
rs2459450	1.00[EUR][1000 genomes]
rs2609015	1.00[EUR][1000 genomes]
rs2609027	1.00[EUR][1000 genomes]
rs2609030	1.00[EUR][1000 genomes]
rs2675781	1.00[EUR][1000 genomes]
rs2675785	1.00[EUR][1000 genomes]
rs2675823	1.00[EUR][1000 genomes]
rs2675824	1.00[EUR][1000 genomes]
rs2675826	1.00[EUR][1000 genomes]
rs2675833	1.00[EUR][1000 genomes]
rs407164	1.00[EUR][1000 genomes]
rs421689	1.00[EUR][1000 genomes]
rs4234694	1.00[EUR][1000 genomes]
rs4234695	1.00[EUR][1000 genomes]
rs4267639	1.00[EUR][1000 genomes]
rs4340700	1.00[EUR][1000 genomes]
rs4401355	1.00[EUR][1000 genomes]
rs4440121	1.00[EUR][1000 genomes]
rs4560294	1.00[AMR][1000 genomes]
rs4688675	1.00[EUR][1000 genomes]
rs4688704	1.00[EUR][1000 genomes]
rs4688717	1.00[EUR][1000 genomes]
rs55723661	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55852678	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56112107	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56198179	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56341000	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56413944	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57077411	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57155820	1.00[AMR][1000 genomes]
rs57756789	1.00[EUR][1000 genomes]
rs57867785	1.00[AMR][1000 genomes]
rs57987466	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58231937	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58854038	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58911362	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59065723	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59337835	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59486246	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59749820	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59944295	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60132317	1.00[EUR][1000 genomes]
rs60209025	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60455882	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs609678	1.00[EUR][1000 genomes]
rs61032466	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61455710	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs621975	1.00[EUR][1000 genomes]
rs628865	1.00[EUR][1000 genomes]
rs6446223	1.00[EUR][1000 genomes]
rs650473	1.00[EUR][1000 genomes]
rs665943	1.00[EUR][1000 genomes]
rs6768539	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6789552	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7373700	1.00[EUR][1000 genomes]
rs73833231	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73833232	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73833239	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73833242	1.00[AMR][1000 genomes]
rs73833247	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73833248	1.00[AMR][1000 genomes]
rs73833404	1.00[AMR][1000 genomes]
rs73833406	1.00[AMR][1000 genomes]
rs73833886	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73833935	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73833940	1.00[AMR][1000 genomes]
rs73833943	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73833947	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73833949	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73833952	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73835518	1.00[EUR][1000 genomes]
rs73835533	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73835535	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73835537	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73835538	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7433944	1.00[EUR][1000 genomes]
rs7642578	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7650772	1.00[EUR][1000 genomes]
rs7653228	1.00[EUR][1000 genomes]
rs936714	1.00[EUR][1000 genomes]
rs9840476	1.00[EUR][1000 genomes]
rs9851304	1.00[EUR][1000 genomes]
rs9857033	1.00[EUR][1000 genomes]

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:50713200-50727600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr3:50714600-50725000	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr3:50723000-50725000	Weak transcription	Brain Substantia Nigra	brain
4	chr3:50723000-50736800	Weak transcription	Brain Hippocampus Middle	brain
5	chr3:50724600-50725400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr3:50724600-50725600	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr3:50724600-50725600	Enhancers	Brain Anterior Caudate	brain
8	chr3:50724600-50725600	Enhancers	HSMMtube	muscle
9	chr3:50724600-50725800	Enhancers	Brain Cingulate Gyrus	brain
10	chr3:50724600-50725800	Enhancers	Skeletal Muscle Female	skeletal muscle
11	chr3:50724600-50727200	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr3:50724600-50727800	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr3:50724800-50725000	Enhancers	H1 Cell Line	embryonic stem cell
14	chr3:50724800-50725000	Enhancers	Muscle Satellite Cultured Cells	--
15	chr3:50724800-50725400	Enhancers	Brain Inferior Temporal Lobe	brain
16	chr3:50724800-50725400	Enhancers	Skeletal Muscle Male	skeletal muscle
17	chr3:50724800-50725400	Enhancers	HSMM	muscle
18	chr3:50724800-50725600	Enhancers	HUES64 Cell Line	embryonic stem cell
19	chr3:50724800-50725600	Enhancers	Brain Angular Gyrus	brain
20	chr3:50724800-50726400	Enhancers	HUES48 Cell Line	embryonic stem cell
21	chr3:50724800-50727000	Enhancers	iPS-20b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links