Variant report

Variant	rs57077411
Chromosome Location	chr3:50841867-50841868
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs13325937	1.00[EUR][1000 genomes]
rs17051012	1.00[AMR][1000 genomes]
rs17051016	1.00[AMR][1000 genomes]
rs17051017	1.00[AMR][1000 genomes]
rs17051404	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2608994	1.00[EUR][1000 genomes]
rs2608996	1.00[EUR][1000 genomes]
rs2609004	1.00[EUR][1000 genomes]
rs2675775	1.00[EUR][1000 genomes]
rs2675797	1.00[EUR][1000 genomes]
rs2675798	1.00[EUR][1000 genomes]
rs4423762	1.00[EUR][1000 genomes]
rs4560294	1.00[AMR][1000 genomes]
rs55694933	1.00[EUR][1000 genomes]
rs55723661	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55731480	1.00[AMR][1000 genomes]
rs55852678	1.00[AMR][1000 genomes]
rs56112107	1.00[AMR][1000 genomes]
rs56198179	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56341000	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56413944	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56890263	1.00[EUR][1000 genomes]
rs56962519	1.00[EUR][1000 genomes]
rs57155820	1.00[AMR][1000 genomes]
rs57376071	1.00[EUR][1000 genomes]
rs57867785	1.00[AMR][1000 genomes]
rs57987466	1.00[AMR][1000 genomes]
rs58225351	1.00[EUR][1000 genomes]
rs58231937	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58293845	1.00[EUR][1000 genomes]
rs58803807	1.00[EUR][1000 genomes]
rs58854038	1.00[AMR][1000 genomes]
rs58911362	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59065723	1.00[AMR][1000 genomes]
rs59337835	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59340349	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59486246	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59749820	1.00[AMR][1000 genomes]
rs59944295	1.00[AMR][1000 genomes]
rs60209025	1.00[AMR][1000 genomes]
rs60420261	1.00[AMR][1000 genomes]
rs60455882	0.81[AFR][1000 genomes]
rs61032466	1.00[AMR][1000 genomes]
rs61174735	1.00[EUR][1000 genomes]
rs61455710	1.00[AMR][1000 genomes]
rs6768539	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6781959	1.00[EUR][1000 genomes]
rs6789552	1.00[AMR][1000 genomes]
rs6799213	1.00[EUR][1000 genomes]
rs6805545	1.00[EUR][1000 genomes]
rs6807662	1.00[EUR][1000 genomes]
rs73833231	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73833232	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73833239	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73833242	1.00[AMR][1000 genomes]
rs73833247	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73833248	1.00[AMR][1000 genomes]
rs73833251	1.00[EUR][1000 genomes]
rs73833404	1.00[AMR][1000 genomes]
rs73833406	1.00[AMR][1000 genomes]
rs73833886	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73833935	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73833940	1.00[AMR][1000 genomes]
rs73833943	1.00[AMR][1000 genomes]
rs73833947	1.00[AMR][1000 genomes]
rs73833949	1.00[AMR][1000 genomes]
rs73833952	1.00[AMR][1000 genomes]
rs73833954	1.00[AMR][1000 genomes]
rs73833977	1.00[EUR][1000 genomes]
rs73833978	1.00[EUR][1000 genomes]
rs73833980	1.00[EUR][1000 genomes]
rs73835533	1.00[AMR][1000 genomes]
rs73835535	1.00[AMR][1000 genomes]
rs73835537	1.00[AMR][1000 genomes]
rs73835538	1.00[AMR][1000 genomes]
rs7642578	1.00[AMR][1000 genomes]
rs9311462	1.00[EUR][1000 genomes]

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:50840400-50844200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr3:50841200-50842200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr3:50841400-50844000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr3:50841800-50842200	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
5	chr3:50841800-50842200	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr3:50841800-50842600	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell

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