Variant report

Variant	rs6805545
Chromosome Location	chr3:51062965-51062966
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs2262848	1.00[YRI][hapmap]
rs2355701	0.83[YRI][hapmap]
rs2608994	1.00[EUR][1000 genomes]
rs2608996	1.00[EUR][1000 genomes]
rs2609004	1.00[EUR][1000 genomes]
rs2675775	1.00[EUR][1000 genomes]
rs2675797	1.00[EUR][1000 genomes]
rs2675798	1.00[EUR][1000 genomes]
rs2675824	0.85[YRI][hapmap]
rs2675826	0.84[YRI][hapmap]
rs4423762	1.00[EUR][1000 genomes]
rs55694933	1.00[EUR][1000 genomes]
rs55699461	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55708856	1.00[EUR][1000 genomes]
rs55723661	1.00[EUR][1000 genomes]
rs56037427	1.00[EUR][1000 genomes]
rs56254449	1.00[EUR][1000 genomes]
rs56367927	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56890263	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56940802	1.00[EUR][1000 genomes]
rs56962519	1.00[EUR][1000 genomes]
rs57077411	1.00[EUR][1000 genomes]
rs57376071	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57742040	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57934774	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58225351	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58231937	1.00[EUR][1000 genomes]
rs58236908	1.00[EUR][1000 genomes]
rs58293845	1.00[EUR][1000 genomes]
rs58314480	1.00[AMR][1000 genomes]
rs58548979	1.00[EUR][1000 genomes]
rs58803807	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59019902	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59557845	1.00[EUR][1000 genomes]
rs59652730	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59794491	1.00[EUR][1000 genomes]
rs60774727	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60973580	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61174735	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61526358	1.00[EUR][1000 genomes]
rs6446242	0.82[AFR][1000 genomes]
rs6446244	0.82[AFR][1000 genomes]
rs6446246	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs6781959	0.83[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6799213	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6804101	1.00[EUR][1000 genomes]
rs6807662	1.00[EUR][1000 genomes]
rs7373700	0.83[YRI][hapmap]
rs73833977	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73833978	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73833980	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73833981	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73833982	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73833985	1.00[EUR][1000 genomes]
rs73833986	1.00[EUR][1000 genomes]
rs73833987	1.00[EUR][1000 genomes]
rs73833989	1.00[EUR][1000 genomes]
rs73833990	1.00[EUR][1000 genomes]
rs73833991	1.00[EUR][1000 genomes]
rs73833992	1.00[EUR][1000 genomes]
rs73833993	1.00[EUR][1000 genomes]
rs73833996	1.00[EUR][1000 genomes]
rs73837406	1.00[EUR][1000 genomes]
rs9311462	0.83[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9821597	1.00[YRI][hapmap];0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491647	chr3:50856276-51245158	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:51060800-51063600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
2	chr3:51061600-51063400	Enhancers	Stomach Mucosa	stomach
3	chr3:51061800-51063200	Enhancers	Primary hematopoietic stem cells	blood
4	chr3:51061800-51063200	Enhancers	Sigmoid Colon	Sigmoid Colon
5	chr3:51061800-51063400	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr3:51062000-51063200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr3:51062000-51063200	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr3:51062000-51063200	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
9	chr3:51062000-51063400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr3:51062000-51063400	Flanking Active TSS	Primary T cells from cord blood	blood
11	chr3:51062000-51063600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr3:51062200-51063000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr3:51062200-51063000	Flanking Active TSS	Primary T cells fromperipheralblood	blood
14	chr3:51062200-51063200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr3:51062200-51063200	Enhancers	Rectal Mucosa Donor 29	rectum
16	chr3:51062200-51063200	Enhancers	Thymus	Thymus
17	chr3:51062200-51063200	Enhancers	Dnd41	blood
18	chr3:51062200-51063200	Enhancers	Hela-S3	cervix
19	chr3:51062200-51063400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
20	chr3:51062400-51063000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr3:51062400-51063200	Enhancers	Primary B cells from peripheral blood	blood
22	chr3:51062400-51063200	Enhancers	Primary hematopoietic stem cells short term culture	blood
23	chr3:51062400-51063200	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
24	chr3:51062400-51063200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr3:51062600-51063000	Enhancers	Primary monocytes fromperipheralblood	blood
26	chr3:51062600-51063000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr3:51062600-51063000	Flanking Active TSS	Colonic Mucosa	Colon
28	chr3:51062600-51063000	Enhancers	Esophagus	oesophagus
29	chr3:51062600-51063000	Enhancers	Stomach Smooth Muscle	stomach
30	chr3:51062600-51063200	Enhancers	Fetal Thymus	thymus
31	chr3:51062600-51063200	Enhancers	Gastric	stomach
32	chr3:51062600-51063200	Enhancers	Left Ventricle	heart
33	chr3:51062600-51063200	Enhancers	NHEK	skin
34	chr3:51062600-51065200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
35	chr3:51062800-51063000	Enhancers	Primary T helper naive cells from peripheral blood	blood
36	chr3:51062800-51063000	Active TSS	Primary T regulatory cells fromperipheralblood	blood
37	chr3:51062800-51063000	Enhancers	Primary T killer memory cells from peripheral blood	blood
38	chr3:51062800-51063200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr3:51062800-51063200	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
40	chr3:51062800-51065200	Enhancers	Primary T helper cells fromperipheralblood	blood
41	chr3:51062800-51065400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
42	chr3:51062800-51065600	Enhancers	Primary T helper naive cells fromperipheralblood	blood

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