Variant report

Variant	rs57934774
Chromosome Location	chr3:51161715-51161716
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs55699461	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56367927	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56890263	1.00[AMR][1000 genomes]
rs57376071	1.00[AMR][1000 genomes]
rs57742040	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58225351	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58314480	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58803807	1.00[AMR][1000 genomes]
rs59019902	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59652730	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59794491	0.91[AFR][1000 genomes]
rs60774727	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60973580	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs61174735	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6781959	1.00[AMR][1000 genomes]
rs6799213	1.00[AMR][1000 genomes]
rs6805545	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73833977	1.00[AMR][1000 genomes]
rs73833978	1.00[AMR][1000 genomes]
rs73833980	1.00[AFR][1000 genomes]
rs73833981	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73833982	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73833992	0.91[AFR][1000 genomes]
rs9311462	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491647	chr3:50856276-51245158	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1005858	chr3:51090373-51444027	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv536569	chr3:51090373-51444027	Flanking Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:51144400-51168000	Weak transcription	Brain Angular Gyrus	brain
2	chr3:51146000-51168000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr3:51157600-51167400	Weak transcription	Stomach Smooth Muscle	stomach
4	chr3:51158400-51168000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr3:51159200-51167400	Weak transcription	Fetal Brain Female	brain
6	chr3:51160800-51168200	Weak transcription	Brain Inferior Temporal Lobe	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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