Variant report

Variant	rs6781959
Chromosome Location	chr3:51104480-51104481
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 85 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs10865962	0.86[LWK][hapmap]
rs11130263	0.86[LWK][hapmap]
rs17051747	1.00[EUR][1000 genomes]
rs2262848	0.83[YRI][hapmap]
rs2355701	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]
rs2608994	1.00[EUR][1000 genomes]
rs2608996	1.00[EUR][1000 genomes]
rs2675797	1.00[EUR][1000 genomes]
rs2675798	1.00[EUR][1000 genomes]
rs4511931	0.86[LWK][hapmap]
rs4586853	0.86[LWK][hapmap]
rs55640023	1.00[EUR][1000 genomes]
rs55694933	1.00[EUR][1000 genomes]
rs55699461	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55708856	1.00[EUR][1000 genomes]
rs56037427	1.00[EUR][1000 genomes]
rs56254449	1.00[EUR][1000 genomes]
rs56367927	1.00[AMR][1000 genomes]
rs56870664	1.00[EUR][1000 genomes]
rs56890263	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56940802	1.00[EUR][1000 genomes]
rs56962519	1.00[EUR][1000 genomes]
rs57077411	1.00[EUR][1000 genomes]
rs57376071	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57742040	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57934774	1.00[AMR][1000 genomes]
rs58225351	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58236908	1.00[EUR][1000 genomes]
rs58293845	1.00[EUR][1000 genomes]
rs58314480	1.00[AMR][1000 genomes]
rs58548979	1.00[EUR][1000 genomes]
rs58803807	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59019902	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59557845	1.00[EUR][1000 genomes]
rs59599274	1.00[EUR][1000 genomes]
rs59652730	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59794491	1.00[EUR][1000 genomes]
rs60166061	1.00[EUR][1000 genomes]
rs60774727	1.00[AMR][1000 genomes]
rs60862896	1.00[EUR][1000 genomes]
rs60973580	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61174735	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61337570	1.00[EUR][1000 genomes]
rs61526358	1.00[EUR][1000 genomes]
rs61570923	1.00[EUR][1000 genomes]
rs6446246	0.91[ASW][hapmap];0.89[MKK][hapmap];0.83[YRI][hapmap]
rs6799213	0.91[LWK][hapmap];0.84[MKK][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6804101	1.00[EUR][1000 genomes]
rs6805545	0.83[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6810241	0.86[LWK][hapmap]
rs7373700	1.00[ASW][hapmap];0.97[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]
rs73833977	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73833978	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73833980	1.00[EUR][1000 genomes]
rs73833981	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73833982	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73833985	1.00[EUR][1000 genomes]
rs73833986	1.00[EUR][1000 genomes]
rs73833987	1.00[EUR][1000 genomes]
rs73833989	1.00[EUR][1000 genomes]
rs73833990	1.00[EUR][1000 genomes]
rs73833991	1.00[EUR][1000 genomes]
rs73833992	1.00[EUR][1000 genomes]
rs73833993	1.00[EUR][1000 genomes]
rs73833996	1.00[EUR][1000 genomes]
rs73837406	1.00[EUR][1000 genomes]
rs73837420	1.00[EUR][1000 genomes]
rs73837421	1.00[EUR][1000 genomes]
rs73837422	1.00[EUR][1000 genomes]
rs73837423	1.00[EUR][1000 genomes]
rs73837425	1.00[EUR][1000 genomes]
rs73837428	1.00[EUR][1000 genomes]
rs73837431	1.00[EUR][1000 genomes]
rs73837432	1.00[EUR][1000 genomes]
rs73837433	1.00[EUR][1000 genomes]
rs73837434	1.00[EUR][1000 genomes]
rs7629420	0.84[LWK][hapmap]
rs7630259	1.00[EUR][1000 genomes]
rs7635095	1.00[EUR][1000 genomes]
rs7642077	1.00[EUR][1000 genomes]
rs9311462	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9821597	0.83[ASW][hapmap];0.83[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491647	chr3:50856276-51245158	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1005858	chr3:51090373-51444027	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv536569	chr3:51090373-51444027	Flanking Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:51103400-51119600	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr3:51104400-51105200	Enhancers	Liver	Liver

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