Variant report

Variant	rs56367927
Chromosome Location	chr3:51067430-51067431
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs55699461	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56890263	1.00[AMR][1000 genomes]
rs57376071	1.00[AMR][1000 genomes]
rs57742040	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57934774	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58225351	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58314480	1.00[AMR][1000 genomes]
rs58803807	1.00[AMR][1000 genomes]
rs59019902	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59652730	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60774727	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60973580	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs61174735	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6446246	0.83[AFR][1000 genomes]
rs6781959	1.00[AMR][1000 genomes]
rs6799213	1.00[AMR][1000 genomes]
rs6805545	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73833977	1.00[AMR][1000 genomes]
rs73833978	1.00[AMR][1000 genomes]
rs73833980	0.88[AFR][1000 genomes]
rs73833981	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73833982	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9311462	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491647	chr3:50856276-51245158	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:51067000-51068000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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