Variant report

Variant	rs61570923
Chromosome Location	chr3:51371530-51371531
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs17051747	1.00[EUR][1000 genomes]
rs17051755	1.00[EUR][1000 genomes]
rs55640023	1.00[EUR][1000 genomes]
rs55694933	1.00[EUR][1000 genomes]
rs55699461	1.00[EUR][1000 genomes]
rs55708856	1.00[EUR][1000 genomes]
rs56037427	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56254449	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56870664	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56940802	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57376071	1.00[EUR][1000 genomes]
rs57742040	1.00[EUR][1000 genomes]
rs58236908	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58293845	1.00[EUR][1000 genomes]
rs58548979	1.00[EUR][1000 genomes]
rs59019902	1.00[EUR][1000 genomes]
rs59557845	1.00[EUR][1000 genomes]
rs59599274	1.00[EUR][1000 genomes]
rs59652730	1.00[EUR][1000 genomes]
rs59794491	1.00[EUR][1000 genomes]
rs60166061	1.00[EUR][1000 genomes]
rs60862896	1.00[EUR][1000 genomes]
rs60973580	1.00[EUR][1000 genomes]
rs61174735	1.00[EUR][1000 genomes]
rs61337570	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61526358	1.00[EUR][1000 genomes]
rs6781959	1.00[EUR][1000 genomes]
rs6799213	1.00[EUR][1000 genomes]
rs6804101	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73833978	1.00[EUR][1000 genomes]
rs73833980	1.00[EUR][1000 genomes]
rs73833981	1.00[EUR][1000 genomes]
rs73833982	1.00[EUR][1000 genomes]
rs73833985	1.00[EUR][1000 genomes]
rs73833986	1.00[EUR][1000 genomes]
rs73833987	1.00[EUR][1000 genomes]
rs73833989	1.00[EUR][1000 genomes]
rs73833990	1.00[EUR][1000 genomes]
rs73833991	1.00[EUR][1000 genomes]
rs73833992	1.00[EUR][1000 genomes]
rs73833993	1.00[EUR][1000 genomes]
rs73833996	1.00[EUR][1000 genomes]
rs73834257	1.00[EUR][1000 genomes]
rs73837406	1.00[EUR][1000 genomes]
rs73837420	1.00[EUR][1000 genomes]
rs73837421	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73837422	1.00[EUR][1000 genomes]
rs73837423	1.00[EUR][1000 genomes]
rs73837425	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73837428	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73837431	1.00[EUR][1000 genomes]
rs73837432	1.00[EUR][1000 genomes]
rs73837433	1.00[EUR][1000 genomes]
rs73837434	1.00[EUR][1000 genomes]
rs7630259	1.00[EUR][1000 genomes]
rs7635095	1.00[EUR][1000 genomes]
rs7642077	1.00[EUR][1000 genomes]
rs9990213	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005858	chr3:51090373-51444027	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv536569	chr3:51090373-51444027	Flanking Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv1014464	chr3:51220151-51909780	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
4	esv20206	chr3:51344873-51415825	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:51341600-51372000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:51344200-51371800	Weak transcription	Brain Substantia Nigra	brain
3	chr3:51353400-51375800	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr3:51353400-51377600	Weak transcription	Left Ventricle	heart
5	chr3:51358000-51376200	Weak transcription	HSMMtube	muscle
6	chr3:51358800-51377400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr3:51364200-51375800	Weak transcription	Right Ventricle	heart
8	chr3:51366400-51377600	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr3:51366600-51377400	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr3:51367200-51371600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr3:51367400-51372000	Strong transcription	Brain Angular Gyrus	brain
12	chr3:51367600-51377800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr3:51368000-51377400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr3:51369200-51371600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr3:51369200-51372000	Strong transcription	Brain Hippocampus Middle	brain
16	chr3:51369200-51374600	Strong transcription	Brain Inferior Temporal Lobe	brain
17	chr3:51369400-51372000	Strong transcription	Fetal Brain Female	brain
18	chr3:51369400-51377400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr3:51369600-51373400	Strong transcription	Brain Anterior Caudate	brain
20	chr3:51369600-51383800	Weak transcription	Fetal Brain Male	brain
21	chr3:51369800-51372400	Strong transcription	Brain Cingulate Gyrus	brain
22	chr3:51370000-51373200	Strong transcription	Brain Germinal Matrix	brain
23	chr3:51370200-51372000	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr3:51370800-51372000	Strong transcription	Cortex derived primary cultured neurospheres	brain
25	chr3:51371000-51375400	Weak transcription	Stomach Smooth Muscle	stomach
26	chr3:51371000-51375800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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