Variant report

Variant	rs73834257
Chromosome Location	chr3:51535299-51535300
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:51534170..51537061-chr3:51667512..51669238,2	MCF-7	breast:
2	chr3:51534724..51536284-chr3:51571592..51573333,2	MCF-7	breast:
3	chr3:51533144..51535964-chr3:51704671..51707377,2	MCF-7	breast:
4	chr3:51533596..51535948-chr3:51713544..51717803,3	K562	blood:
5	chr3:51426988..51429067-chr3:51532869..51536301,5	K562	blood:
6	chr3:51535149..51536784-chr3:51671586..51672589,18	MCF-7	breast:
7	chr3:51532744..51536241-chr3:51571123..51575595,5	K562	blood:
8	chr3:51427878..51430154-chr3:51533292..51535600,2	MCF-7	breast:
9	chr3:51532096..51536424-chr3:51702408..51707498,7	K562	blood:
10	chr3:51428575..51432934-chr3:51531325..51537191,8	K562	blood:

No data

Variant related genes	Relation type
ENSG00000179837	Chromatin interaction
ENSG00000164080	Chromatin interaction
ENSG00000164081	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs12485610	0.82[AFR][1000 genomes]
rs12490471	0.82[AFR][1000 genomes]
rs17051747	1.00[EUR][1000 genomes]
rs17051755	1.00[EUR][1000 genomes]
rs55640023	1.00[EUR][1000 genomes]
rs55701928	1.00[AMR][1000 genomes]
rs55760693	1.00[AMR][1000 genomes]
rs56037427	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56254449	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56368293	1.00[AMR][1000 genomes]
rs56870664	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56940802	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57164594	1.00[AMR][1000 genomes]
rs57577112	1.00[AMR][1000 genomes]
rs58236908	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59144959	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59381739	1.00[AMR][1000 genomes]
rs59599274	1.00[EUR][1000 genomes]
rs60166061	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60862896	1.00[EUR][1000 genomes]
rs61337570	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61570923	1.00[EUR][1000 genomes]
rs61729076	1.00[AMR][1000 genomes]
rs6804101	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73834273	1.00[AMR][1000 genomes]
rs73834274	1.00[AMR][1000 genomes]
rs73834276	1.00[AMR][1000 genomes]
rs73834279	1.00[AMR][1000 genomes]
rs73837406	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73837420	1.00[EUR][1000 genomes]
rs73837421	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73837422	1.00[EUR][1000 genomes]
rs73837423	1.00[EUR][1000 genomes]
rs73837425	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73837428	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73837431	1.00[EUR][1000 genomes]
rs73837432	1.00[EUR][1000 genomes]
rs73837433	1.00[EUR][1000 genomes]
rs73837434	1.00[EUR][1000 genomes]
rs7630259	1.00[EUR][1000 genomes]
rs7635095	1.00[EUR][1000 genomes]
rs7642077	1.00[EUR][1000 genomes]
rs9990213	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014464	chr3:51220151-51909780	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:51534600-51535800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr3:51534600-51535800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr3:51534600-51535800	Weak transcription	Fetal Heart	heart
4	chr3:51534600-51536400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
5	chr3:51534800-51535400	Weak transcription	Liver	Liver
6	chr3:51534800-51535600	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr3:51534800-51535600	Enhancers	K562	blood
8	chr3:51534800-51535800	Weak transcription	Primary T cells from cord blood	blood
9	chr3:51534800-51535800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr3:51534800-51535800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr3:51534800-51535800	Weak transcription	Brain Angular Gyrus	brain
12	chr3:51534800-51535800	Weak transcription	Brain Anterior Caudate	brain
13	chr3:51534800-51535800	Weak transcription	Brain Cingulate Gyrus	brain
14	chr3:51534800-51535800	Weak transcription	Brain Substantia Nigra	brain
15	chr3:51534800-51535800	Weak transcription	Colon Smooth Muscle	Colon
16	chr3:51534800-51535800	Weak transcription	Fetal Lung	lung
17	chr3:51534800-51535800	Weak transcription	Pancreas	Pancrea
18	chr3:51534800-51535800	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr3:51534800-51536000	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr3:51534800-51536000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr3:51534800-51536000	Weak transcription	Duodenum Mucosa	Duodenum
22	chr3:51534800-51536000	Weak transcription	Fetal Muscle Trunk	muscle
23	chr3:51534800-51536000	Weak transcription	Fetal Muscle Leg	muscle
24	chr3:51534800-51536000	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr3:51534800-51536200	Enhancers	Primary T helper cells PMA-I stimulated	--
26	chr3:51534800-51536200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
27	chr3:51534800-51536200	Enhancers	Dnd41	blood
28	chr3:51534800-51536200	Enhancers	GM12878-XiMat	blood
29	chr3:51534800-51536200	Enhancers	Hela-S3	cervix
30	chr3:51534800-51536400	Enhancers	Primary T cells fromperipheralblood	blood
31	chr3:51534800-51536600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr3:51534800-51537000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr3:51534800-51537200	Weak transcription	Placenta Amnion	Placenta Amnion
34	chr3:51534800-51538000	Enhancers	Placenta	Placenta
35	chr3:51534800-51539600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr3:51535000-51535400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr3:51535000-51536000	Weak transcription	Primary T helper cells fromperipheralblood	blood
38	chr3:51535000-51536000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr3:51535000-51536000	Weak transcription	Rectal Smooth Muscle	rectum
40	chr3:51535000-51536000	Weak transcription	Monocytes-CD14+_RO01746	blood
41	chr3:51535000-51536200	Enhancers	Stomach Smooth Muscle	stomach
42	chr3:51535000-51541400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr3:51535200-51535600	Weak transcription	Primary B cells from peripheral blood	blood
44	chr3:51535200-51535600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
45	chr3:51535200-51535600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
46	chr3:51535200-51535600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
47	chr3:51535200-51535600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
48	chr3:51535200-51535600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
49	chr3:51535200-51535600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
50	chr3:51535200-51535600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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