Variant report

Variant	rs73834273
Chromosome Location	chr3:51711884-51711885
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr3:51711823-51711889	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr3:51709411..51712097-chr3:51714024..51715928,2	MCF-7	breast:
2	chr3:51704380..51708267-chr3:51709236..51713754,5	K562	blood:
3	chr3:51710305..51712521-chr3:51712692..51715658,3	MCF-7	breast:
4	chr3:51711799..51714156-chr3:51719027..51720830,2	MCF-7	breast:

Variant related genes	Relation type
TEX264	TF binding region
ENSG00000164081	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs4687769	0.87[AFR][1000 genomes]
rs55701928	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55706150	0.82[AFR][1000 genomes]
rs55760693	1.00[AMR][1000 genomes]
rs55872019	0.80[AFR][1000 genomes]
rs56368293	1.00[AMR][1000 genomes]
rs59144959	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59381739	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61729076	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7375146	0.83[AFR][1000 genomes]
rs73834257	1.00[AMR][1000 genomes]
rs73834274	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73834276	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73834279	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014464	chr3:51220151-51909780	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	esv1814919	chr3:51703488-51752684	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:51706200-51712800	Weak transcription	Aorta	Aorta
2	chr3:51706400-51733400	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr3:51706400-51741000	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr3:51706600-51714000	Weak transcription	Right Atrium	heart
5	chr3:51706600-51715800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
6	chr3:51706600-51716600	Weak transcription	A549	lung
7	chr3:51706600-51719800	Weak transcription	Psoas Muscle	Psoas
8	chr3:51706600-51721200	Weak transcription	Fetal Brain Male	brain
9	chr3:51706600-51724600	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr3:51706600-51739600	Weak transcription	Small Intestine	intestine
11	chr3:51706800-51712800	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr3:51706800-51714800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
13	chr3:51706800-51715200	Enhancers	Primary T helper naive cells from peripheral blood	blood
14	chr3:51706800-51715400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr3:51706800-51715600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
16	chr3:51707000-51714600	Weak transcription	Hela-S3	cervix
17	chr3:51707000-51715600	Weak transcription	K562	blood
18	chr3:51707200-51712800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr3:51707400-51712200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr3:51707400-51712400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr3:51707600-51714400	Weak transcription	Stomach Mucosa	stomach
22	chr3:51707600-51714600	Genic enhancers	Primary mononuclear cells fromperipheralblood	Blood
23	chr3:51707800-51714800	Weak transcription	Fetal Heart	heart
24	chr3:51707800-51715800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr3:51707800-51716000	Weak transcription	Fetal Kidney	kidney
26	chr3:51707800-51740400	Strong transcription	Fetal Intestine Small	intestine
27	chr3:51708000-51712200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr3:51708000-51713200	Genic enhancers	Primary B cells from peripheral blood	blood
29	chr3:51708000-51714400	Strong transcription	Fetal Muscle Leg	muscle
30	chr3:51708000-51714800	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
31	chr3:51708000-51715600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr3:51708000-51718600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr3:51708200-51712600	Genic enhancers	Skeletal Muscle Female	skeletal muscle
34	chr3:51708200-51712800	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
35	chr3:51708200-51713800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
36	chr3:51708200-51713800	Strong transcription	Cortex derived primary cultured neurospheres	brain
37	chr3:51708200-51714000	Strong transcription	Primary monocytes fromperipheralblood	blood
38	chr3:51708200-51714200	Strong transcription	Adipose Nuclei	Adipose
39	chr3:51708200-51714800	Strong transcription	Duodenum Mucosa	Duodenum
40	chr3:51708200-51715400	Genic enhancers	Primary T cells fromperipheralblood	blood
41	chr3:51708200-51715400	Genic enhancers	Spleen	Spleen
42	chr3:51708200-51715600	Strong transcription	Fetal Stomach	stomach
43	chr3:51708400-51712800	Strong transcription	Duodenum Smooth Muscle	Duodenum
44	chr3:51708400-51713000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr3:51708400-51713000	Strong transcription	Sigmoid Colon	Sigmoid Colon
46	chr3:51708400-51713200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr3:51708400-51714000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr3:51708400-51714200	Strong transcription	Rectal Mucosa Donor 29	rectum
49	chr3:51708400-51715200	Genic enhancers	Primary T cells from cord blood	blood
50	chr3:51708600-51712400	Genic enhancers	Stomach Smooth Muscle	stomach

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