Variant report

Variant	rs59144959
Chromosome Location	chr3:51753060-51753061
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:51745481..51748293-chr3:51752667..51754621,3	MCF-7	breast:
2	chr3:51752820..51753847-chr3:51833406..51834953,17	MCF-7	breast:
3	chr3:51536165..51536709-chr3:51752886..51753415,2	MCF-7	breast:
4	chr3:51744580..51745508-chr3:51752921..51753467,3	MCF-7	breast:
5	chr3:51741483..51743641-chr3:51752692..51755400,2	MCF-7	breast:
6	chr3:51752803..51753838-chr3:51833596..51834593,4	MCF-7	breast:
7	chr3:51747093..51749731-chr3:51751469..51754766,3	K562	blood:

Variant related genes	Relation type
ENSG00000164082	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs55701928	1.00[AMR][1000 genomes]
rs55760693	1.00[AMR][1000 genomes]
rs59381739	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61729076	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73834257	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73834273	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73834274	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73834276	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73834279	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014464	chr3:51220151-51909780	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:51740200-51755400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr3:51741800-51753200	Weak transcription	Right Ventricle	heart
3	chr3:51741800-51756000	Weak transcription	Gastric	stomach
4	chr3:51742400-51753200	Weak transcription	Brain Hippocampus Middle	brain
5	chr3:51743800-51754000	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr3:51749800-51755000	Weak transcription	Primary T cells from cord blood	blood
7	chr3:51750800-51755600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr3:51751400-51755400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr3:51752000-51753400	Enhancers	Fetal Brain Male	brain
10	chr3:51752000-51753400	Enhancers	Fetal Muscle Trunk	muscle
11	chr3:51752200-51755400	Weak transcription	Fetal Brain Female	brain
12	chr3:51752200-51756400	Enhancers	Primary T cells fromperipheralblood	blood
13	chr3:51752400-51753400	Enhancers	Fetal Muscle Leg	muscle
14	chr3:51752600-51753200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr3:51752600-51755800	Weak transcription	Brain Germinal Matrix	brain
16	chr3:51752800-51753400	Enhancers	Primary T killer memory cells from peripheral blood	blood
17	chr3:51752800-51753600	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr3:51752800-51753600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
19	chr3:51752800-51753600	Enhancers	Primary T helper cells fromperipheralblood	blood
20	chr3:51752800-51753600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr3:51752800-51754200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr3:51752800-51755800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
23	chr3:51753000-51753200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr3:51753000-51753200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr3:51753000-51753200	Enhancers	Brain Substantia Nigra	brain
26	chr3:51753000-51753400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
27	chr3:51753000-51753400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
28	chr3:51753000-51753400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr3:51753000-51753400	Enhancers	Spleen	Spleen
30	chr3:51753000-51753600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
31	chr3:51753000-51753600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr3:51753000-51753600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
33	chr3:51753000-51753600	Enhancers	HepG2	liver
34	chr3:51753000-51756200	Enhancers	Primary T helper cells PMA-I stimulated	--
35	chr3:51753000-51756400	Enhancers	Primary T helper naive cells fromperipheralblood	blood

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