Variant report

Variant	rs73834274
Chromosome Location	chr3:51717852-51717853
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs4687769	0.87[AFR][1000 genomes]
rs55701928	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55706150	0.82[AFR][1000 genomes]
rs55760693	1.00[AMR][1000 genomes]
rs55872019	0.80[AFR][1000 genomes]
rs56368293	1.00[AMR][1000 genomes]
rs59144959	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59381739	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61729076	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7375146	0.83[AFR][1000 genomes]
rs73834257	1.00[AMR][1000 genomes]
rs73834273	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73834276	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73834279	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014464	chr3:51220151-51909780	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	esv1814919	chr3:51703488-51752684	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:51706400-51733400	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr3:51706400-51741000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr3:51706600-51719800	Weak transcription	Psoas Muscle	Psoas
4	chr3:51706600-51721200	Weak transcription	Fetal Brain Male	brain
5	chr3:51706600-51724600	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr3:51706600-51739600	Weak transcription	Small Intestine	intestine
7	chr3:51707800-51740400	Strong transcription	Fetal Intestine Small	intestine
8	chr3:51708000-51718600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr3:51708800-51738800	Strong transcription	Fetal Intestine Large	intestine
10	chr3:51709600-51718000	Weak transcription	NHDF-Ad	bronchial
11	chr3:51711800-51718000	Weak transcription	Brain Germinal Matrix	brain
12	chr3:51713600-51718600	Enhancers	Left Ventricle	heart
13	chr3:51714000-51718400	Weak transcription	Aorta	Aorta
14	chr3:51714000-51722400	Enhancers	Right Atrium	heart
15	chr3:51714400-51718400	Enhancers	Adipose Nuclei	Adipose
16	chr3:51714400-51719000	Genic enhancers	Stomach Smooth Muscle	stomach
17	chr3:51714400-51722200	Genic enhancers	Fetal Muscle Leg	muscle
18	chr3:51714400-51722400	Genic enhancers	Fetal Muscle Trunk	muscle
19	chr3:51714800-51721000	Enhancers	Fetal Heart	heart
20	chr3:51715800-51721400	Genic enhancers	Fetal Thymus	thymus
21	chr3:51716000-51718400	Weak transcription	Lung	lung
22	chr3:51716000-51720000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr3:51716000-51720200	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr3:51716200-51718000	Weak transcription	Brain Substantia Nigra	brain
25	chr3:51716200-51718000	Weak transcription	Ovary	ovary
26	chr3:51716200-51718000	Weak transcription	Placenta Amnion	Placenta Amnion
27	chr3:51716200-51718000	Weak transcription	NHLF	lung
28	chr3:51716200-51718200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
29	chr3:51716200-51718200	Enhancers	Primary T killer memory cells from peripheral blood	blood
30	chr3:51716200-51718200	Weak transcription	Brain Angular Gyrus	brain
31	chr3:51716200-51718400	Weak transcription	HUES6 Cell Line	embryonic stem cell
32	chr3:51716200-51718400	Enhancers	Primary T helper cells PMA-I stimulated	--
33	chr3:51716200-51718600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr3:51716200-51718800	Enhancers	Primary hematopoietic stem cells	blood
35	chr3:51716200-51719000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr3:51716200-51719600	Strong transcription	Brain Inferior Temporal Lobe	brain
37	chr3:51716200-51719600	Strong transcription	Fetal Stomach	stomach
38	chr3:51716200-51720000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
39	chr3:51716200-51720000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
40	chr3:51716200-51720000	Weak transcription	NH-A	brain
41	chr3:51716200-51720200	Strong transcription	Brain Hippocampus Middle	brain
42	chr3:51716200-51720800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
43	chr3:51716200-51726200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
44	chr3:51716200-51737000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
45	chr3:51716400-51718000	Weak transcription	Pancreas	Pancrea
46	chr3:51716400-51718400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr3:51716400-51718600	Weak transcription	Duodenum Smooth Muscle	Duodenum
48	chr3:51716400-51718600	Weak transcription	Rectal Smooth Muscle	rectum
49	chr3:51716400-51719000	Strong transcription	Dnd41	blood
50	chr3:51716400-51720000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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