Variant report

Variant	rs73834276
Chromosome Location	chr3:51734928-51734929
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:51727445..51729583-chr3:51732971..51735394,3	MCF-7	breast:
2	chr3:51734229..51736388-chr3:51834430..51837314,2	K562	blood:

Variant related genes	Relation type
ENSG00000201595	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs4687769	0.87[AFR][1000 genomes]
rs55701928	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55706150	0.82[AFR][1000 genomes]
rs55760693	1.00[AMR][1000 genomes]
rs55872019	0.80[AFR][1000 genomes]
rs59144959	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59381739	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61729076	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7375146	0.83[AFR][1000 genomes]
rs73834257	1.00[AMR][1000 genomes]
rs73834273	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73834274	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73834279	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014464	chr3:51220151-51909780	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	esv1814919	chr3:51703488-51752684	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv590278	chr3:51724147-51736744	Strong transcription Weak transcription Genic enhancers Enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv590279	chr3:51724147-51737852	Weak transcription Genic enhancers Strong transcription Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:51706400-51741000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr3:51706600-51739600	Weak transcription	Small Intestine	intestine
3	chr3:51707800-51740400	Strong transcription	Fetal Intestine Small	intestine
4	chr3:51708800-51738800	Strong transcription	Fetal Intestine Large	intestine
5	chr3:51716200-51737000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr3:51716400-51741200	Weak transcription	Fetal Kidney	kidney
7	chr3:51716800-51738800	Strong transcription	Cortex derived primary cultured neurospheres	brain
8	chr3:51717400-51739800	Strong transcription	Liver	Liver
9	chr3:51719600-51741200	Weak transcription	NHDF-Ad	bronchial
10	chr3:51720600-51739800	Strong transcription	Rectal Mucosa Donor 29	rectum
11	chr3:51720600-51740000	Strong transcription	Sigmoid Colon	Sigmoid Colon
12	chr3:51721000-51735600	Weak transcription	K562	blood
13	chr3:51721000-51738200	Weak transcription	A549	lung
14	chr3:51721000-51741000	Weak transcription	HUVEC	blood vessel
15	chr3:51721400-51738800	Strong transcription	Colonic Mucosa	Colon
16	chr3:51721400-51739400	Strong transcription	Thymus	Thymus
17	chr3:51721400-51739800	Strong transcription	Duodenum Mucosa	Duodenum
18	chr3:51721400-51740000	Strong transcription	Placenta	Placenta
19	chr3:51721400-51740200	Strong transcription	Esophagus	oesophagus
20	chr3:51721400-51740400	Strong transcription	Dnd41	blood
21	chr3:51721400-51740600	Strong transcription	Monocytes-CD14+_RO01746	blood
22	chr3:51721400-51740800	Strong transcription	Primary monocytes fromperipheralblood	blood
23	chr3:51721600-51739400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr3:51721600-51740400	Strong transcription	Fetal Stomach	stomach
25	chr3:51721600-51740800	Weak transcription	HSMM	muscle
26	chr3:51721800-51740200	Strong transcription	Stomach Smooth Muscle	stomach
27	chr3:51722200-51736600	Weak transcription	HMEC	breast
28	chr3:51722200-51739200	Strong transcription	Fetal Muscle Leg	muscle
29	chr3:51722400-51739000	Strong transcription	Fetal Muscle Trunk	muscle
30	chr3:51722400-51740200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr3:51722600-51740000	Strong transcription	Primary B cells from peripheral blood	blood
32	chr3:51722600-51741200	Weak transcription	Stomach Mucosa	stomach
33	chr3:51723200-51738600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr3:51723800-51738200	Strong transcription	Fetal Thymus	thymus
35	chr3:51723800-51739400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr3:51724000-51739000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr3:51724000-51740200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
38	chr3:51724000-51740400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr3:51724400-51741200	Weak transcription	Primary hematopoietic stem cells	blood
40	chr3:51725400-51740800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
41	chr3:51725600-51736800	Strong transcription	Skeletal Muscle Female	skeletal muscle
42	chr3:51725600-51737000	Weak transcription	HUES48 Cell Line	embryonic stem cell
43	chr3:51725600-51740000	Strong transcription	Lung	lung
44	chr3:51725600-51740200	Strong transcription	Gastric	stomach
45	chr3:51726200-51736200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr3:51726200-51738800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr3:51726400-51737200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr3:51727000-51739200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr3:51727200-51736400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
50	chr3:51727400-51740200	Weak transcription	Psoas Muscle	Psoas

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