Variant report

Variant	rs61729076
Chromosome Location	chr3:51751760-51751761
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:51747093..51749731-chr3:51751469..51754766,3	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs55701928	1.00[AMR][1000 genomes]
rs55760693	1.00[AMR][1000 genomes]
rs59144959	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59381739	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73834257	1.00[AMR][1000 genomes]
rs73834273	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73834274	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73834276	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73834279	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014464	chr3:51220151-51909780	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	esv1814919	chr3:51703488-51752684	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:51740200-51755400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr3:51740600-51752800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr3:51741600-51752200	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr3:51741600-51753000	Weak transcription	Brain Substantia Nigra	brain
5	chr3:51741800-51752600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr3:51741800-51753200	Weak transcription	Right Ventricle	heart
7	chr3:51741800-51756000	Weak transcription	Gastric	stomach
8	chr3:51742400-51753200	Weak transcription	Brain Hippocampus Middle	brain
9	chr3:51743800-51752600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr3:51743800-51754000	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr3:51745000-51753000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr3:51745400-51752800	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr3:51745600-51752200	Strong transcription	Fetal Brain Female	brain
14	chr3:51748200-51752600	Strong transcription	Brain Germinal Matrix	brain
15	chr3:51748400-51752000	Enhancers	Spleen	Spleen
16	chr3:51749800-51755000	Weak transcription	Primary T cells from cord blood	blood
17	chr3:51750400-51753000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr3:51750800-51755600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr3:51751000-51752000	Enhancers	Pancreas	Pancrea
20	chr3:51751200-51752800	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr3:51751400-51751800	Enhancers	Brain Anterior Caudate	brain
22	chr3:51751400-51755400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr3:51751600-51752000	Weak transcription	Fetal Brain Male	brain
24	chr3:51751600-51753000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links