Variant report

Variant	rs57577112
Chromosome Location	chr3:51253808-51253809
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs55694933	0.84[AFR][1000 genomes]
rs56037427	1.00[AMR][1000 genomes]
rs56254449	1.00[AMR][1000 genomes]
rs56307672	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56368293	1.00[AMR][1000 genomes]
rs56870664	1.00[AMR][1000 genomes]
rs56940802	1.00[AMR][1000 genomes]
rs56962519	0.84[AFR][1000 genomes]
rs57164594	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58236908	1.00[AMR][1000 genomes]
rs58293845	0.84[AFR][1000 genomes]
rs59557845	0.84[AFR][1000 genomes]
rs59749820	1.00[EUR][1000 genomes]
rs60166061	1.00[AMR][1000 genomes]
rs60209025	1.00[EUR][1000 genomes]
rs60420261	1.00[EUR][1000 genomes]
rs61337570	1.00[AMR][1000 genomes]
rs61526358	0.84[AFR][1000 genomes]
rs6446242	1.00[EUR][1000 genomes]
rs6446244	1.00[EUR][1000 genomes]
rs6446246	1.00[EUR][1000 genomes]
rs6804101	1.00[AMR][1000 genomes]
rs7373700	1.00[EUR][1000 genomes]
rs73833952	1.00[EUR][1000 genomes]
rs73833954	1.00[EUR][1000 genomes]
rs73833985	0.84[AFR][1000 genomes]
rs73833986	0.84[AFR][1000 genomes]
rs73833989	0.81[AFR][1000 genomes]
rs73833990	0.84[AFR][1000 genomes]
rs73833991	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73833993	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73833996	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73834257	1.00[AMR][1000 genomes]
rs73837406	1.00[AMR][1000 genomes]
rs73837421	1.00[AMR][1000 genomes]
rs73837425	1.00[AMR][1000 genomes]
rs73837428	1.00[AMR][1000 genomes]
rs7433944	1.00[EUR][1000 genomes]
rs7642578	1.00[EUR][1000 genomes]
rs9818443	1.00[EUR][1000 genomes]
rs9821597	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005858	chr3:51090373-51444027	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv536569	chr3:51090373-51444027	Flanking Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv1014464	chr3:51220151-51909780	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:51234600-51262800	Weak transcription	Brain Angular Gyrus	brain
2	chr3:51235800-51285000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr3:51236600-51265000	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr3:51248000-51259200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr3:51248000-51282600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr3:51248200-51259200	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr3:51248200-51265600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr3:51249600-51259600	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr3:51249800-51259600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr3:51250400-51256200	Weak transcription	Stomach Smooth Muscle	stomach
11	chr3:51250600-51254400	Strong transcription	Brain Hippocampus Middle	brain
12	chr3:51251600-51254800	Strong transcription	Brain Inferior Temporal Lobe	brain
13	chr3:51251600-51264800	Weak transcription	Brain Germinal Matrix	brain
14	chr3:51251800-51254200	Strong transcription	Fetal Brain Female	brain
15	chr3:51252000-51288200	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr3:51252000-51312600	Weak transcription	HSMMtube	muscle
17	chr3:51252400-51254400	Strong transcription	Brain Anterior Caudate	brain
18	chr3:51252600-51259400	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr3:51252800-51256400	Strong transcription	Brain Cingulate Gyrus	brain
20	chr3:51252800-51277000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr3:51253200-51259000	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr3:51253400-51259000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr3:51253400-51274000	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr3:51253400-51312200	Weak transcription	Brain Substantia Nigra	brain
25	chr3:51253800-51255000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr3:51253800-51255000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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