Variant report

Variant	rs60420261
Chromosome Location	chr3:51017307-51017308
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs11923336	1.00[EUR][1000 genomes]
rs13092850	1.00[EUR][1000 genomes]
rs17051404	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2262848	1.00[EUR][1000 genomes]
rs2355701	1.00[EUR][1000 genomes]
rs2459450	1.00[EUR][1000 genomes]
rs2609015	1.00[EUR][1000 genomes]
rs2609027	1.00[EUR][1000 genomes]
rs2609030	1.00[EUR][1000 genomes]
rs2675781	1.00[EUR][1000 genomes]
rs2675785	1.00[EUR][1000 genomes]
rs2675823	1.00[EUR][1000 genomes]
rs2675824	1.00[EUR][1000 genomes]
rs2675826	1.00[EUR][1000 genomes]
rs2675833	1.00[EUR][1000 genomes]
rs4401355	1.00[EUR][1000 genomes]
rs4440121	1.00[EUR][1000 genomes]
rs4688675	1.00[EUR][1000 genomes]
rs4688704	1.00[EUR][1000 genomes]
rs4688717	1.00[EUR][1000 genomes]
rs55723661	1.00[AMR][1000 genomes]
rs55731480	1.00[AMR][1000 genomes]
rs56198179	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56307672	1.00[EUR][1000 genomes]
rs56341000	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56413944	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57077411	1.00[AMR][1000 genomes]
rs57164594	1.00[EUR][1000 genomes]
rs57577112	1.00[EUR][1000 genomes]
rs57756789	1.00[EUR][1000 genomes]
rs57867785	1.00[AMR][1000 genomes]
rs58231937	1.00[AMR][1000 genomes]
rs58911362	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59486246	1.00[AMR][1000 genomes]
rs59749820	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59944295	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60132317	1.00[EUR][1000 genomes]
rs60209025	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60455882	1.00[EUR][1000 genomes]
rs6446223	1.00[EUR][1000 genomes]
rs6446242	1.00[EUR][1000 genomes]
rs6446244	1.00[EUR][1000 genomes]
rs6446246	1.00[EUR][1000 genomes]
rs6768539	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7373700	1.00[EUR][1000 genomes]
rs73833247	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73833248	1.00[AMR][1000 genomes]
rs73833886	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73833935	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73833940	1.00[AMR][1000 genomes]
rs73833943	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73833947	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73833949	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73833952	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73833954	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7428650	1.00[AFR][1000 genomes]
rs7433944	1.00[EUR][1000 genomes]
rs7642578	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7650772	1.00[EUR][1000 genomes]
rs7653228	1.00[EUR][1000 genomes]
rs9818443	1.00[EUR][1000 genomes]
rs9821597	1.00[EUR][1000 genomes]
rs9851304	1.00[EUR][1000 genomes]
rs9857033	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491647	chr3:50856276-51245158	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1004881	chr3:50900793-51032918	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv536568	chr3:50900793-51032918	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:51016600-51017800	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr3:51016600-51019800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr3:51017000-51017400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr3:51017000-51017600	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr3:51017000-51017600	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr3:51017000-51017800	Enhancers	H1 Cell Line	embryonic stem cell
7	chr3:51017000-51020800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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