Variant report

Variant	rs56341000
Chromosome Location	chr3:50886485-50886486
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 104 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:103)

rs_ID	r²[population]
rs1038415	1.00[EUR][1000 genomes]
rs107457	1.00[EUR][1000 genomes]
rs11923336	1.00[EUR][1000 genomes]
rs13092850	1.00[EUR][1000 genomes]
rs1552255	1.00[EUR][1000 genomes]
rs1552256	1.00[EUR][1000 genomes]
rs17051012	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17051016	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17051017	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17051404	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1843073	1.00[EUR][1000 genomes]
rs2232251	1.00[EUR][1000 genomes]
rs2262848	1.00[EUR][1000 genomes]
rs2355337	1.00[EUR][1000 genomes]
rs2355701	1.00[EUR][1000 genomes]
rs2459450	1.00[EUR][1000 genomes]
rs2609015	1.00[EUR][1000 genomes]
rs2609027	1.00[EUR][1000 genomes]
rs2609030	1.00[EUR][1000 genomes]
rs2675781	1.00[EUR][1000 genomes]
rs2675785	1.00[EUR][1000 genomes]
rs2675823	1.00[EUR][1000 genomes]
rs2675824	1.00[EUR][1000 genomes]
rs2675826	1.00[EUR][1000 genomes]
rs2675833	1.00[EUR][1000 genomes]
rs407164	1.00[EUR][1000 genomes]
rs421689	1.00[EUR][1000 genomes]
rs4234694	1.00[EUR][1000 genomes]
rs4234695	1.00[EUR][1000 genomes]
rs4267639	1.00[EUR][1000 genomes]
rs4340700	1.00[EUR][1000 genomes]
rs4401355	1.00[EUR][1000 genomes]
rs4440121	1.00[EUR][1000 genomes]
rs4688675	1.00[EUR][1000 genomes]
rs4688704	1.00[EUR][1000 genomes]
rs4688717	1.00[EUR][1000 genomes]
rs55723661	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55731480	1.00[AMR][1000 genomes]
rs55852678	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56112107	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56198179	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56413944	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57077411	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57155820	1.00[AMR][1000 genomes]
rs57756789	1.00[EUR][1000 genomes]
rs57867785	1.00[AMR][1000 genomes]
rs57987466	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58231937	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58911362	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59065723	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59337835	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59340349	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59486246	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59749820	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59944295	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60132317	1.00[EUR][1000 genomes]
rs60209025	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60420261	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60455882	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs609678	1.00[EUR][1000 genomes]
rs61032466	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61455710	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs621975	1.00[EUR][1000 genomes]
rs628865	1.00[EUR][1000 genomes]
rs6446223	1.00[EUR][1000 genomes]
rs6446242	1.00[EUR][1000 genomes]
rs6446244	1.00[EUR][1000 genomes]
rs6446246	1.00[EUR][1000 genomes]
rs650473	1.00[EUR][1000 genomes]
rs665943	1.00[EUR][1000 genomes]
rs6768539	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6789552	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7373700	1.00[EUR][1000 genomes]
rs73833231	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73833232	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73833239	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73833242	1.00[AMR][1000 genomes]
rs73833247	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73833248	1.00[AMR][1000 genomes]
rs73833404	1.00[AMR][1000 genomes]
rs73833406	1.00[AMR][1000 genomes]
rs73833886	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73833935	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73833940	1.00[AMR][1000 genomes]
rs73833943	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73833947	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73833949	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73833952	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73833954	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73835535	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73835537	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73835538	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7428650	0.85[AFR][1000 genomes]
rs7433944	1.00[EUR][1000 genomes]
rs7642578	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7650772	1.00[EUR][1000 genomes]
rs7653228	1.00[EUR][1000 genomes]
rs936714	1.00[EUR][1000 genomes]
rs9818443	1.00[EUR][1000 genomes]
rs9821597	1.00[EUR][1000 genomes]
rs9840476	1.00[EUR][1000 genomes]
rs9851304	1.00[EUR][1000 genomes]
rs9857033	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491647	chr3:50856276-51245158	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:50886000-50899800	Weak transcription	Brain Inferior Temporal Lobe	brain

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