Variant report

Variant	rs73833943
Chromosome Location	chr3:50928474-50928475
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs17051404	1.00[AMR][1000 genomes]
rs55723661	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55731480	1.00[AMR][1000 genomes]
rs56198179	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56341000	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56413944	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57077411	1.00[AMR][1000 genomes]
rs57867785	1.00[AMR][1000 genomes]
rs57987466	1.00[AMR][1000 genomes]
rs58231937	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58911362	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59337835	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59340349	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59486246	1.00[AMR][1000 genomes]
rs59749820	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59944295	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60209025	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60420261	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61032466	1.00[AMR][1000 genomes]
rs6768539	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73833231	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73833232	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73833239	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73833242	1.00[AMR][1000 genomes]
rs73833247	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73833248	1.00[AMR][1000 genomes]
rs73833404	1.00[AMR][1000 genomes]
rs73833406	1.00[AMR][1000 genomes]
rs73833886	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73833935	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73833940	1.00[AMR][1000 genomes]
rs73833947	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73833949	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73833952	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73833954	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7428650	0.96[AFR][1000 genomes]
rs7642578	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491647	chr3:50856276-51245158	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1004881	chr3:50900793-51032918	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv536568	chr3:50900793-51032918	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:50927200-50931800	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr3:50928000-50929800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr3:50928200-50928600	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
4	chr3:50928200-50928600	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
5	chr3:50928200-50928600	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
6	chr3:50928200-50929000	Enhancers	H1 Cell Line	embryonic stem cell
7	chr3:50928200-50929000	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
8	chr3:50928200-50929000	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
9	chr3:50928200-50929000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
10	chr3:50928200-50930400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
11	chr3:50928400-50929400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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