Variant report

Variant	rs7373700
Chromosome Location	chr3:50986284-50986285
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 95 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:91)

rs_ID	r²[population]
rs10865962	0.83[LWK][hapmap]
rs11130258	0.83[AMR][1000 genomes]
rs11130263	0.83[LWK][hapmap]
rs11921011	0.83[LWK][hapmap]
rs11923336	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13092850	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13325937	1.00[AMR][1000 genomes]
rs17051404	1.00[EUR][1000 genomes]
rs1843073	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2085580	0.83[LWK][hapmap]
rs2129069	1.00[AMR][1000 genomes]
rs2262848	0.83[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2355337	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2355701	1.00[ASW][hapmap];0.97[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2459450	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2608994	1.00[AMR][1000 genomes]
rs2608996	1.00[AMR][1000 genomes]
rs2609004	0.91[ASW][hapmap];0.89[MKK][hapmap];0.83[YRI][hapmap];1.00[AMR][1000 genomes]
rs2609014	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2609015	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2609017	0.85[AFR][1000 genomes]
rs2609027	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2609030	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2675775	0.95[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2675779	1.00[ASW][hapmap];0.97[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]
rs2675781	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2675785	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2675797	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2675798	1.00[AMR][1000 genomes]
rs2675815	1.00[ASW][hapmap];0.97[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs2675823	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2675824	1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2675826	1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2675833	0.91[ASW][hapmap];0.86[MKK][hapmap];0.83[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4401355	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4423762	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4440121	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4511931	0.83[LWK][hapmap]
rs4586853	0.83[LWK][hapmap]
rs4688675	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4688704	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4688717	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56198179	1.00[EUR][1000 genomes]
rs56307672	1.00[EUR][1000 genomes]
rs56341000	1.00[EUR][1000 genomes]
rs56413944	1.00[EUR][1000 genomes]
rs56890263	0.83[AFR][1000 genomes]
rs57164594	1.00[EUR][1000 genomes]
rs57577112	1.00[EUR][1000 genomes]
rs57756789	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58803807	0.82[AFR][1000 genomes]
rs58911362	1.00[EUR][1000 genomes]
rs59340349	1.00[EUR][1000 genomes]
rs59749820	1.00[EUR][1000 genomes]
rs59944295	1.00[EUR][1000 genomes]
rs60132317	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60209025	1.00[EUR][1000 genomes]
rs60420261	1.00[EUR][1000 genomes]
rs60455882	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6446223	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6446242	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6446244	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6446246	0.91[ASW][hapmap];0.89[MKK][hapmap];0.83[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6768539	1.00[EUR][1000 genomes]
rs6781959	1.00[ASW][hapmap];0.97[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]
rs6799213	0.89[LWK][hapmap];0.84[MKK][hapmap];0.96[YRI][hapmap]
rs6805545	0.83[YRI][hapmap]
rs6807662	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6810241	0.83[LWK][hapmap]
rs73833239	1.00[EUR][1000 genomes]
rs73833247	1.00[EUR][1000 genomes]
rs73833251	1.00[AMR][1000 genomes]
rs73833935	1.00[EUR][1000 genomes]
rs73833947	1.00[EUR][1000 genomes]
rs73833949	1.00[EUR][1000 genomes]
rs73833952	1.00[EUR][1000 genomes]
rs73833954	1.00[EUR][1000 genomes]
rs7433944	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7629420	0.81[LWK][hapmap]
rs7642158	0.83[LWK][hapmap]
rs7642578	1.00[EUR][1000 genomes]
rs7650772	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7653228	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9311462	1.00[ASW][hapmap];0.97[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs9811552	1.00[CHD][hapmap]
rs9818443	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9821597	0.83[ASW][hapmap];0.83[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9840476	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9851304	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9854588	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9857033	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491647	chr3:50856276-51245158	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1004881	chr3:50900793-51032918	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv536568	chr3:50900793-51032918	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv1803890	chr3:50966037-50987194	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:50974000-50991200	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr3:50983600-50987800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr3:50984400-50987800	Weak transcription	HUES48 Cell Line	embryonic stem cell

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