Variant report

Variant	rs2129069
Chromosome Location	chr3:50710094-50710095
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs1038415	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs107457	0.83[AMR][1000 genomes]
rs11130258	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs11923336	1.00[AMR][1000 genomes]
rs13092850	1.00[AMR][1000 genomes]
rs13325937	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1552255	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1552256	0.83[AMR][1000 genomes]
rs1843073	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2262848	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2355337	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2355701	1.00[AMR][1000 genomes]
rs2459450	1.00[AMR][1000 genomes]
rs2608994	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2608996	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2609004	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2609014	1.00[AMR][1000 genomes]
rs2609015	1.00[AMR][1000 genomes]
rs2609027	1.00[AMR][1000 genomes]
rs2609030	1.00[AMR][1000 genomes]
rs2675775	1.00[AMR][1000 genomes]
rs2675781	1.00[AMR][1000 genomes]
rs2675785	1.00[AMR][1000 genomes]
rs2675797	1.00[AMR][1000 genomes]
rs2675798	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2675815	1.00[AMR][1000 genomes]
rs2675823	1.00[AMR][1000 genomes]
rs2675824	1.00[AMR][1000 genomes]
rs2675826	1.00[AMR][1000 genomes]
rs2675833	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs407164	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs421689	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4234694	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4234695	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4267639	0.94[AFR][1000 genomes]
rs4340700	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4401355	1.00[AMR][1000 genomes]
rs4423762	1.00[AMR][1000 genomes]
rs4440121	1.00[AMR][1000 genomes]
rs4688675	1.00[AMR][1000 genomes]
rs4688704	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4688717	0.83[AMR][1000 genomes]
rs57756789	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60132317	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs60455882	1.00[AMR][1000 genomes]
rs621975	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs628865	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6446223	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs650473	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6807662	1.00[AMR][1000 genomes]
rs7373700	1.00[AMR][1000 genomes]
rs73833251	1.00[AMR][1000 genomes]
rs7650772	1.00[AMR][1000 genomes]
rs7653228	1.00[AMR][1000 genomes]
rs936714	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9825283	0.97[AFR][1000 genomes]
rs9840476	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9851304	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9854588	1.00[AMR][1000 genomes]
rs9857033	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:50687000-50712000	Weak transcription	Right Atrium	heart
2	chr3:50708400-50710200	Enhancers	HSMM	muscle
3	chr3:50708800-50711400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr3:50709000-50711400	Weak transcription	Brain Cingulate Gyrus	brain
5	chr3:50709000-50711600	Weak transcription	Pancreas	Pancrea
6	chr3:50709000-50711600	Weak transcription	Right Ventricle	heart
7	chr3:50709000-50711800	Weak transcription	Brain Hippocampus Middle	brain
8	chr3:50709000-50711800	Weak transcription	Esophagus	oesophagus
9	chr3:50709200-50711400	Weak transcription	Brain Angular Gyrus	brain
10	chr3:50709400-50711800	Weak transcription	HSMMtube	muscle
11	chr3:50710000-50710200	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links