Variant report

Variant	rs4423762
Chromosome Location	chr3:50822004-50822005
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs1038415	1.00[AMR][1000 genomes]
rs107457	0.83[AMR][1000 genomes]
rs11130258	0.83[AMR][1000 genomes]
rs11923336	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13092850	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13325937	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1552255	1.00[AMR][1000 genomes]
rs1552256	0.83[AMR][1000 genomes]
rs1843073	1.00[AMR][1000 genomes]
rs2129069	1.00[AMR][1000 genomes]
rs2262848	1.00[AMR][1000 genomes]
rs2355337	1.00[AMR][1000 genomes]
rs2355701	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2459450	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2608994	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2608996	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2609004	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2609014	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2609015	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2609017	0.91[AFR][1000 genomes]
rs2609027	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2609030	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2675775	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2675781	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2675785	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2675797	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2675798	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2675815	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2675823	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2675824	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2675826	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2675833	1.00[AMR][1000 genomes]
rs407164	1.00[AMR][1000 genomes]
rs421689	1.00[AMR][1000 genomes]
rs4234694	1.00[AMR][1000 genomes]
rs4234695	1.00[AMR][1000 genomes]
rs4340700	1.00[AMR][1000 genomes]
rs4401355	1.00[AMR][1000 genomes]
rs4440121	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4688675	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4688704	1.00[AMR][1000 genomes]
rs4688717	0.83[AMR][1000 genomes]
rs55694933	1.00[EUR][1000 genomes]
rs55723661	1.00[EUR][1000 genomes]
rs56890263	1.00[EUR][1000 genomes]
rs56962519	1.00[EUR][1000 genomes]
rs57077411	1.00[EUR][1000 genomes]
rs57756789	1.00[AMR][1000 genomes]
rs58225351	1.00[EUR][1000 genomes]
rs58231937	1.00[EUR][1000 genomes]
rs58803807	1.00[EUR][1000 genomes]
rs59486246	1.00[EUR][1000 genomes]
rs60132317	0.83[AMR][1000 genomes]
rs60455882	1.00[AMR][1000 genomes]
rs621975	1.00[AMR][1000 genomes]
rs628865	1.00[AMR][1000 genomes]
rs6446223	1.00[AMR][1000 genomes]
rs6446242	1.00[AMR][1000 genomes]
rs6446244	1.00[AMR][1000 genomes]
rs6446246	1.00[AMR][1000 genomes]
rs650473	1.00[AMR][1000 genomes]
rs6805545	1.00[EUR][1000 genomes]
rs6807662	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7373700	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73833251	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73833977	1.00[EUR][1000 genomes]
rs73833978	1.00[EUR][1000 genomes]
rs7433944	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7650772	1.00[AMR][1000 genomes]
rs7653228	1.00[AMR][1000 genomes]
rs9311462	1.00[EUR][1000 genomes]
rs936714	1.00[AMR][1000 genomes]
rs9818443	1.00[AMR][1000 genomes]
rs9821597	1.00[AMR][1000 genomes]
rs9840476	1.00[AMR][1000 genomes]
rs9851304	1.00[AMR][1000 genomes]
rs9854588	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9857033	1.00[AMR][1000 genomes]

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:50818000-50824200	Weak transcription	Brain Cingulate Gyrus	brain
2	chr3:50819400-50825200	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr3:50819400-50825600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr3:50821000-50825600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr3:50821200-50827400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr3:50821400-50822200	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links