Variant report

Variant	rs56962519
Chromosome Location	chr3:51092098-51092099
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs2608994	1.00[EUR][1000 genomes]
rs2608996	1.00[EUR][1000 genomes]
rs2675797	1.00[EUR][1000 genomes]
rs2675798	1.00[EUR][1000 genomes]
rs4423762	1.00[EUR][1000 genomes]
rs55640023	1.00[EUR][1000 genomes]
rs55694933	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55699461	1.00[EUR][1000 genomes]
rs55708856	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56037427	1.00[EUR][1000 genomes]
rs56254449	1.00[EUR][1000 genomes]
rs56307672	0.85[AFR][1000 genomes]
rs56870664	1.00[EUR][1000 genomes]
rs56890263	1.00[EUR][1000 genomes]
rs56940802	1.00[EUR][1000 genomes]
rs57077411	1.00[EUR][1000 genomes]
rs57376071	1.00[EUR][1000 genomes]
rs57577112	0.84[AFR][1000 genomes]
rs57742040	1.00[EUR][1000 genomes]
rs58225351	1.00[EUR][1000 genomes]
rs58236908	1.00[EUR][1000 genomes]
rs58293845	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58548979	1.00[EUR][1000 genomes]
rs58803807	1.00[EUR][1000 genomes]
rs59019902	1.00[EUR][1000 genomes]
rs59557845	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59652730	1.00[EUR][1000 genomes]
rs59794491	1.00[EUR][1000 genomes]
rs60862896	1.00[EUR][1000 genomes]
rs60973580	1.00[EUR][1000 genomes]
rs61174735	1.00[EUR][1000 genomes]
rs61337570	1.00[EUR][1000 genomes]
rs61526358	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6781959	1.00[EUR][1000 genomes]
rs6799213	1.00[EUR][1000 genomes]
rs6804101	1.00[EUR][1000 genomes]
rs6805545	1.00[EUR][1000 genomes]
rs6807662	1.00[EUR][1000 genomes]
rs73833977	1.00[EUR][1000 genomes]
rs73833978	1.00[EUR][1000 genomes]
rs73833980	1.00[EUR][1000 genomes]
rs73833981	1.00[EUR][1000 genomes]
rs73833982	1.00[EUR][1000 genomes]
rs73833985	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73833986	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73833987	1.00[EUR][1000 genomes]
rs73833989	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73833990	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73833991	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73833992	1.00[EUR][1000 genomes]
rs73833993	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73833996	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73837406	1.00[EUR][1000 genomes]
rs73837420	1.00[EUR][1000 genomes]
rs73837421	1.00[EUR][1000 genomes]
rs73837422	1.00[EUR][1000 genomes]
rs73837423	1.00[EUR][1000 genomes]
rs73837425	1.00[EUR][1000 genomes]
rs73837428	1.00[EUR][1000 genomes]
rs9311462	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491647	chr3:50856276-51245158	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1005858	chr3:51090373-51444027	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv536569	chr3:51090373-51444027	Flanking Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:51086800-51094600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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