Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:175368720..175371663-chr4:175377792..175381396,3	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11133038	0.98[ASN][1000 genomes]
rs11133040	0.99[ASN][1000 genomes]
rs17052166	1.00[ASN][1000 genomes]
rs1816204	0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs2098948	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2555667	0.86[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2612656	0.82[JPT][hapmap]
rs2612694	0.81[ASN][1000 genomes]
rs34991202	0.96[ASN][1000 genomes]
rs35866534	0.93[ASN][1000 genomes]
rs3846298	0.82[JPT][hapmap]
rs3857074	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs3857075	0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs3909712	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4450901	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6813462	0.92[ASN][1000 genomes]
rs6838650	0.99[ASN][1000 genomes]
rs6857399	0.96[ASN][1000 genomes]
rs7670400	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7685956	0.82[JPT][hapmap]
rs7691993	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869116	chr4:175231090-175801761	Flanking Active TSS Enhancers Genic enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:175371800-175382600	Weak transcription	Small Intestine	intestine
2	chr4:175374200-175378800	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr4:175374600-175382800	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr4:175376000-175379400	Enhancers	Colon Smooth Muscle	Colon
5	chr4:175376200-175378800	Weak transcription	Pancreas	Pancrea
6	chr4:175376400-175381600	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr4:175376600-175381600	Weak transcription	Fetal Intestine Small	intestine
8	chr4:175377000-175379600	Enhancers	Rectal Smooth Muscle	rectum
9	chr4:175377800-175378600	Weak transcription	Stomach Smooth Muscle	stomach
10	chr4:175378000-175378600	Weak transcription	Stomach Mucosa	stomach
11	chr4:175378400-175378800	Weak transcription	Fetal Stomach	stomach

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