Variant report
| Variant | rs7670400 |
|---|---|
| Chromosome Location | chr4:175393357-175393358 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs11133038 | 0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.99[ASN][1000 genomes] |
| rs11133040 | 0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17052166 | 0.82[AMR][1000 genomes];0.99[ASN][1000 genomes] |
| rs1816204 | 0.84[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs2098948 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2555667 | 0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs2612656 | 0.84[JPT][hapmap] |
| rs2612665 | 0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs2612694 | 0.82[ASN][1000 genomes] |
| rs34991202 | 0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[ASN][1000 genomes] |
| rs35866534 | 0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[ASN][1000 genomes] |
| rs3846298 | 0.84[JPT][hapmap] |
| rs3857074 | 0.83[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs3857075 | 0.80[CEU][hapmap];0.84[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs3909712 | 0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs6419992 | 0.81[AMR][1000 genomes];0.80[ASN][1000 genomes] |
| rs6813462 | 0.93[ASN][1000 genomes] |
| rs6838650 | 0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6857399 | 0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[ASN][1000 genomes] |
| rs7685956 | 0.84[JPT][hapmap];0.81[AMR][1000 genomes];0.80[ASN][1000 genomes] |
| rs7691986 | 0.84[AMR][1000 genomes] |
| rs7691993 | 0.83[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv869116 | chr4:175231090-175801761 | Flanking Active TSS Enhancers Genic enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 13 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:175393000-175395800 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
