Variant report

Variant	rs261267
Chromosome Location	chr15:58604998-58604999
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1037041	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs1122207	0.96[CEU][hapmap];0.88[EUR][1000 genomes]
rs1122208	0.96[CEU][hapmap];0.88[EUR][1000 genomes]
rs11633876	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs11638393	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs11855841	0.95[EUR][1000 genomes]
rs12591422	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs1552505	0.96[CEU][hapmap];0.88[EUR][1000 genomes]
rs1711046	0.93[EUR][1000 genomes]
rs183785	0.92[EUR][1000 genomes]
rs2016415	0.87[EUR][1000 genomes]
rs261268	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs261270	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047246	chr15:58375607-58707158	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv833024	chr15:58447459-58621963	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1051058	chr15:58519922-59092530	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
4	nsv542401	chr15:58519922-59092530	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
5	nsv529717	chr15:58519923-58756814	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv1042201	chr15:58520746-58780710	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv569598	chr15:58552606-58852463	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
8	nsv904266	chr15:58580921-58689187	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58595800-58605000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
2	chr15:58599800-58606600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr15:58602600-58606200	Weak transcription	Thymus	Thymus
4	chr15:58602800-58605600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr15:58603000-58605000	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr15:58603000-58605000	Weak transcription	Spleen	Spleen
7	chr15:58603000-58606000	Weak transcription	Lung	lung
8	chr15:58603000-58606800	Weak transcription	Adipose Nuclei	Adipose
9	chr15:58603200-58605600	Weak transcription	Fetal Thymus	thymus
10	chr15:58603200-58605600	Weak transcription	Right Ventricle	heart
11	chr15:58603200-58606000	Weak transcription	Esophagus	oesophagus
12	chr15:58603200-58606000	Weak transcription	Right Atrium	heart
13	chr15:58604400-58608600	Enhancers	Primary T cells from cord blood	blood
14	chr15:58604600-58605200	Enhancers	Fetal Kidney	kidney
15	chr15:58604800-58605000	Enhancers	K562	blood
16	chr15:58604800-58605400	Enhancers	Placenta	Placenta
17	chr15:58604800-58607600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
18	chr15:58604800-58608200	Enhancers	Primary T killer naive cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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