Variant report

Variant	rs261268
Chromosome Location	chr15:58605120-58605121
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:58605115..58606727-chr15:59224287..59226768,2	K562	blood:
2	chr15:58595612..58601278-chr15:58601529..58605992,7	K562	blood:

Variant related genes	Relation type
ENSG00000137776	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1037040	0.80[CHB][hapmap]
rs1037041	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1122207	0.96[CEU][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1122208	0.96[CEU][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11633876	1.00[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11637094	0.86[CHB][hapmap]
rs11638393	1.00[CEU][hapmap];0.86[CHB][hapmap];0.85[JPT][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11855002	0.80[CHB][hapmap]
rs11855841	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12591422	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs1552505	0.96[CEU][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1711046	0.80[CHB][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs183785	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs187774	1.00[YRI][hapmap]
rs2016415	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs261267	0.97[EUR][1000 genomes]
rs261270	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs500590	0.80[AFR][1000 genomes]
rs672493	0.83[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047246	chr15:58375607-58707158	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv833024	chr15:58447459-58621963	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1051058	chr15:58519922-59092530	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
4	nsv542401	chr15:58519922-59092530	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
5	nsv529717	chr15:58519923-58756814	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv1042201	chr15:58520746-58780710	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv569598	chr15:58552606-58852463	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
8	nsv904266	chr15:58580921-58689187	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58599800-58606600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr15:58602600-58606200	Weak transcription	Thymus	Thymus
3	chr15:58602800-58605600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr15:58603000-58606000	Weak transcription	Lung	lung
5	chr15:58603000-58606800	Weak transcription	Adipose Nuclei	Adipose
6	chr15:58603200-58605600	Weak transcription	Fetal Thymus	thymus
7	chr15:58603200-58605600	Weak transcription	Right Ventricle	heart
8	chr15:58603200-58606000	Weak transcription	Esophagus	oesophagus
9	chr15:58603200-58606000	Weak transcription	Right Atrium	heart
10	chr15:58604400-58608600	Enhancers	Primary T cells from cord blood	blood
11	chr15:58604600-58605200	Enhancers	Fetal Kidney	kidney
12	chr15:58604800-58605400	Enhancers	Placenta	Placenta
13	chr15:58604800-58607600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
14	chr15:58604800-58608200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
15	chr15:58605000-58605200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr15:58605000-58605200	Flanking Active TSS	K562	blood
17	chr15:58605000-58606200	Enhancers	Spleen	Spleen
18	chr15:58605000-58606800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
19	chr15:58605000-58607600	Enhancers	Primary T cells fromperipheralblood	blood
20	chr15:58605000-58608000	Enhancers	Primary T killer memory cells from peripheral blood	blood

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