Variant report

Variant	rs2616664
Chromosome Location	chr10:61485660-61485661
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10443925	0.90[CHB][hapmap];0.81[JPT][hapmap];0.86[ASN][1000 genomes]
rs10739999	0.89[CHB][hapmap];0.85[JPT][hapmap];0.87[ASN][1000 genomes]
rs10821584	0.86[ASN][1000 genomes]
rs10993984	0.89[ASN][1000 genomes]
rs1171608	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.97[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap]
rs1871090	0.86[ASN][1000 genomes]
rs1913509	0.90[CHB][hapmap];0.84[CHD][hapmap];0.81[JPT][hapmap];0.85[ASN][1000 genomes]
rs1913510	0.90[CHB][hapmap];0.81[JPT][hapmap];0.87[ASN][1000 genomes]
rs2014327	0.90[CHB][hapmap];0.84[CHD][hapmap];0.81[JPT][hapmap];0.86[ASN][1000 genomes]
rs2137906	0.95[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.93[TSI][hapmap];0.86[YRI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6479646	0.89[ASN][1000 genomes]
rs6479647	0.89[ASN][1000 genomes]
rs66792225	0.93[ASN][1000 genomes]
rs7896470	0.95[CHB][hapmap];0.97[CHD][hapmap];0.81[JPT][hapmap];0.92[ASN][1000 genomes]
rs9633551	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv975775	chr10:61477927-61486070	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61483400-61486600	Enhancers	Skeletal Muscle Male	skeletal muscle
2	chr10:61484400-61487000	Enhancers	Rectal Mucosa Donor 31	rectum
3	chr10:61484400-61487600	Weak transcription	Psoas Muscle	Psoas
4	chr10:61485200-61486600	Enhancers	Rectal Mucosa Donor 29	rectum
5	chr10:61485200-61486600	Enhancers	Stomach Mucosa	stomach
6	chr10:61485600-61486000	Weak transcription	Colonic Mucosa	Colon
7	chr10:61485600-61493200	Weak transcription	Skeletal Muscle Female	skeletal muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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