Variant report

Variant	rs66792225
Chromosome Location	chr10:61493419-61493420
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10443925	0.92[ASN][1000 genomes]
rs10739999	0.92[ASN][1000 genomes]
rs10821584	0.93[ASN][1000 genomes]
rs10993980	0.85[AFR][1000 genomes]
rs10993984	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1871090	0.91[ASN][1000 genomes]
rs1913509	0.90[ASN][1000 genomes]
rs1913510	0.92[ASN][1000 genomes]
rs2014327	0.92[ASN][1000 genomes]
rs2137906	0.89[ASN][1000 genomes]
rs2616664	0.93[ASN][1000 genomes]
rs6479646	0.96[ASN][1000 genomes]
rs6479647	0.96[ASN][1000 genomes]
rs7896470	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7915601	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9633551	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3347621	chr10:61490062-61527578	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv3427654	chr10:61491530-61526282	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61487200-61494800	Weak transcription	Stomach Mucosa	stomach
2	chr10:61493400-61494000	Weak transcription	Skeletal Muscle Female	skeletal muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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