Variant report

Variant	rs6479647
Chromosome Location	chr10:61509364-61509365
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10443925	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10739999	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10821584	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10993984	0.96[ASN][1000 genomes]
rs1871090	0.93[ASN][1000 genomes]
rs1913509	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1913510	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2014327	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2137906	0.85[ASN][1000 genomes]
rs2616664	0.89[ASN][1000 genomes]
rs6479646	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66792225	0.96[ASN][1000 genomes]
rs7896470	0.98[ASN][1000 genomes]
rs7915601	0.86[ASN][1000 genomes]
rs9633551	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3347621	chr10:61490062-61527578	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv3427654	chr10:61491530-61526282	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61505400-61511000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr10:61507200-61510600	Enhancers	Pancreatic Islets	Pancreatic Islet
3	chr10:61507400-61510200	Enhancers	Skeletal Muscle Male	skeletal muscle
4	chr10:61508200-61511000	Enhancers	Psoas Muscle	Psoas
5	chr10:61508400-61509400	Enhancers	Stomach Mucosa	stomach
6	chr10:61509000-61509400	Enhancers	Fetal Muscle Leg	muscle
7	chr10:61509000-61509600	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr10:61509200-61509600	Enhancers	Rectal Mucosa Donor 31	rectum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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