Variant report

Variant	rs7896470
Chromosome Location	chr10:61498947-61498948
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10443925	0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs10739999	0.94[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs10821584	0.95[ASN][1000 genomes]
rs10993984	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1171608	0.95[CHB][hapmap];0.97[CHD][hapmap];0.80[GIH][hapmap];0.81[JPT][hapmap]
rs1871090	0.91[ASN][1000 genomes]
rs1913509	0.95[CHB][hapmap];0.87[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.90[ASN][1000 genomes]
rs1913510	0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs2014327	0.95[CHB][hapmap];0.87[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.94[ASN][1000 genomes]
rs2137906	0.89[CHB][hapmap];0.97[CHD][hapmap];0.80[GIH][hapmap];0.81[JPT][hapmap];0.87[ASN][1000 genomes]
rs2616664	0.95[CHB][hapmap];0.97[CHD][hapmap];0.81[JPT][hapmap];0.92[ASN][1000 genomes]
rs6479646	0.98[ASN][1000 genomes]
rs6479647	0.98[ASN][1000 genomes]
rs66792225	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7915601	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7919794	0.98[AFR][1000 genomes]
rs9633551	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3347621	chr10:61490062-61527578	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv3427654	chr10:61491530-61526282	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7896470	SLC16A9	cis	cerebellum	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61495200-61507400	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr10:61496000-61500600	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr10:61496000-61507200	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr10:61498200-61506200	Weak transcription	Stomach Mucosa	stomach
5	chr10:61498600-61507000	Weak transcription	Skeletal Muscle Female	skeletal muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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