Variant report

Variant	rs262376
Chromosome Location	chr7:103452917-103452918
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs17133096	0.87[ASN][1000 genomes]
rs17156232	0.93[ASN][1000 genomes]
rs262360	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs262368	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs262369	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs262374	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs262377	0.94[ASN][1000 genomes]
rs262378	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs262379	0.94[ASN][1000 genomes]
rs264375	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427799	chr7:103250733-103454202	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	esv1843940	chr7:103421702-103590285	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103450800-103456600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:103451200-103453800	Enhancers	HepG2	liver
3	chr7:103451200-103455000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr7:103451600-103453200	Enhancers	K562	blood
5	chr7:103452000-103453000	Active TSS	Pancreatic Islets	Pancreatic Islet
6	chr7:103452000-103453200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
7	chr7:103452200-103453000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
8	chr7:103452200-103453000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
9	chr7:103452200-103453000	Flanking Active TSS	Liver	Liver
10	chr7:103452600-103453000	Enhancers	Stomach Mucosa	stomach
11	chr7:103452800-103453000	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
12	chr7:103452800-103453000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
13	chr7:103452800-103453000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
14	chr7:103452800-103453400	Enhancers	Primary T helper cells fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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