Variant report

Variant	rs262379
Chromosome Location	chr7:103450151-103450152
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1615525	1.00[CEU][hapmap]
rs17133096	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs17156232	0.87[ASN][1000 genomes]
rs262335	1.00[CEU][hapmap]
rs262336	1.00[CEU][hapmap]
rs262337	1.00[CEU][hapmap]
rs262360	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs262368	1.00[CEU][hapmap];0.85[YRI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs262369	1.00[CEU][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs262374	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs262376	0.94[ASN][1000 genomes]
rs262377	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs262378	1.00[CEU][hapmap];0.92[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs264375	0.88[ASN][1000 genomes]
rs963938	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427799	chr7:103250733-103454202	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	esv1843940	chr7:103421702-103590285	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103446200-103452000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr7:103449200-103451000	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr7:103449200-103451200	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr7:103449200-103451200	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr7:103449200-103451200	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr7:103449200-103451200	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr7:103449400-103450200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr7:103449400-103450200	Genic enhancers	HepG2	liver
9	chr7:103449400-103450200	Enhancers	K562	blood
10	chr7:103449400-103450400	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr7:103449600-103451000	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr7:103449800-103451200	Enhancers	H1 Cell Line	embryonic stem cell
13	chr7:103450000-103450200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
14	chr7:103450000-103450200	Enhancers	Primary T helper cells PMA-I stimulated	--
15	chr7:103450000-103450600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr7:103450000-103452200	Enhancers	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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