Variant report

Variant	rs262377
Chromosome Location	chr7:103450867-103450868
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs17133096	0.81[ASN][1000 genomes]
rs17156232	0.87[ASN][1000 genomes]
rs262360	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs262368	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs262369	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs262374	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs262376	0.94[ASN][1000 genomes]
rs262378	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs262379	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs264375	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427799	chr7:103250733-103454202	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	esv1843940	chr7:103421702-103590285	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103446200-103452000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr7:103449200-103451000	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr7:103449200-103451200	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr7:103449200-103451200	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr7:103449200-103451200	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr7:103449200-103451200	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr7:103449600-103451000	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr7:103449800-103451200	Enhancers	H1 Cell Line	embryonic stem cell
9	chr7:103450000-103452200	Enhancers	Liver	Liver
10	chr7:103450200-103451600	Flanking Active TSS	K562	blood
11	chr7:103450200-103452800	Enhancers	Fetal Kidney	kidney
12	chr7:103450400-103451200	Flanking Active TSS	HepG2	liver
13	chr7:103450600-103451200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr7:103450600-103452400	Enhancers	Primary T helper naive cells from peripheral blood	blood
15	chr7:103450800-103456600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links