Variant report

Variant	rs262899
Chromosome Location	chr6:37198501-37198502
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:37197805..37200451-chr6:37282782..37284455,2	K562	blood:
2	chr6:37194643..37196896-chr6:37198311..37201656,3	K562	blood:

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs1224289	0.81[CHD][hapmap];1.00[JPT][hapmap]
rs149702	1.00[JPT][hapmap]
rs149704	1.00[JPT][hapmap]
rs149705	1.00[JPT][hapmap]
rs149707	0.91[CHD][hapmap];1.00[JPT][hapmap]
rs149708	0.91[CHD][hapmap];1.00[JPT][hapmap]
rs149710	1.00[JPT][hapmap]
rs149711	1.00[JPT][hapmap]
rs149712	1.00[JPT][hapmap]
rs149718	0.91[CHD][hapmap];1.00[JPT][hapmap]
rs166394	0.91[CHD][hapmap];1.00[JPT][hapmap]
rs17572438	0.91[CHD][hapmap];1.00[JPT][hapmap]
rs195370	1.00[JPT][hapmap]
rs195422	0.91[CHD][hapmap];1.00[JPT][hapmap]
rs195423	1.00[JPT][hapmap]
rs195424	1.00[JPT][hapmap]
rs195425	1.00[JPT][hapmap]
rs195426	1.00[JPT][hapmap]
rs195427	1.00[JPT][hapmap]
rs195742	0.91[CHD][hapmap];1.00[JPT][hapmap]
rs195747	1.00[JPT][hapmap]
rs195748	0.91[CHD][hapmap];1.00[JPT][hapmap]
rs195751	0.91[CHD][hapmap];1.00[JPT][hapmap]
rs195752	0.91[CHD][hapmap];1.00[JPT][hapmap]
rs195753	0.89[CHD][hapmap];1.00[JPT][hapmap]
rs195754	1.00[JPT][hapmap]
rs195756	1.00[JPT][hapmap]
rs195759	1.00[JPT][hapmap]
rs195761	1.00[JPT][hapmap]
rs195762	1.00[JPT][hapmap]
rs195763	0.91[CHD][hapmap];1.00[JPT][hapmap]
rs2008782	1.00[JPT][hapmap]
rs2144408	1.00[JPT][hapmap]
rs2295244	1.00[JPT][hapmap]
rs2622884	1.00[JPT][hapmap]
rs2622892	0.91[CHD][hapmap];1.00[JPT][hapmap]
rs2622900	0.92[CEU][hapmap];1.00[JPT][hapmap]
rs262920	0.91[CHD][hapmap];1.00[JPT][hapmap]
rs262923	1.00[JPT][hapmap]
rs262924	0.91[CHD][hapmap];1.00[JPT][hapmap]
rs262925	0.87[GIH][hapmap];1.00[JPT][hapmap];0.82[MKK][hapmap]
rs262939	1.00[JPT][hapmap]
rs262942	1.00[JPT][hapmap]
rs2842618	1.00[JPT][hapmap]
rs398739	0.92[CEU][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap];0.83[YRI][hapmap];0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs410711	1.00[JPT][hapmap]
rs4143230	1.00[JPT][hapmap]
rs418343	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs425267	0.91[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap]
rs441745	1.00[JPT][hapmap]
rs446344	1.00[JPT][hapmap]
rs4714056	1.00[JPT][hapmap]
rs517672	1.00[JPT][hapmap]
rs6457986	0.91[CHD][hapmap];1.00[JPT][hapmap]
rs6917404	0.89[CHD][hapmap];1.00[JPT][hapmap]
rs6917722	0.91[CHD][hapmap];1.00[JPT][hapmap]
rs7761532	0.91[CHD][hapmap];1.00[JPT][hapmap]
rs9470546	0.91[CHD][hapmap];1.00[JPT][hapmap]

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37191200-37199800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr6:37191400-37207400	Weak transcription	Dnd41	blood
3	chr6:37191400-37207600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr6:37197400-37198600	Enhancers	Fetal Intestine Large	intestine
5	chr6:37197600-37198600	Enhancers	Fetal Intestine Small	intestine
6	chr6:37198000-37204200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr6:37198200-37199600	Weak transcription	K562	blood
8	chr6:37198200-37200000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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