Variant report

Variant	rs149702
Chromosome Location	chr6:37282656-37282657
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:21)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:21 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:36843073..36845440-chr6:37281034..37282864,2	K562	blood:
2	chr6:37271320..37272196-chr6:37282227..37283319,5	MCF-7	breast:
3	chr6:37282099..37284245-chr6:37290002..37291830,2	K562	blood:
4	chr6:37017164..37020087-chr6:37281669..37283613,2	K562	blood:
5	chr6:37223187..37227140-chr6:37282393..37285987,5	K562	blood:
6	chr6:37281296..37284244-chr6:37292284..37294312,2	K562	blood:
7	chr6:36996464..36997699-chr6:37282346..37283344,3	K562	blood:
8	chr6:37282536..37284630-chr6:37320686..37322716,2	MCF-7	breast:
9	chr6:37239434..37242325-chr6:37280434..37282809,2	K562	blood:
10	chr6:36843073..36845711-chr6:37281034..37284112,3	K562	blood:
11	chr6:37282610..37284241-chr6:37286388..37288029,2	K562	blood:
12	chr6:37282286..37284247-chr6:37288615..37291603,3	MCF-7	breast:
13	chr6:37281610..37286621-chr6:37292182..37294312,4	K562	blood:
14	chr6:37281351..37283268-chr6:37319089..37321813,2	K562	blood:
15	chr6:37271395..37272381-chr6:37282528..37283240,4	K562	blood:
16	chr6:36985650..36986592-chr6:37282339..37282929,2	K562	blood:
17	chr6:37271296..37272285-chr6:37282404..37283289,7	MCF-7	breast:
18	chr6:37223187..37227140-chr6:37282296..37285987,5	K562	blood:
19	chr6:37188223..37190409-chr6:37281169..37282824,2	K562	blood:
20	chr6:37269212..37274068-chr6:37276535..37284218,11	K562	blood:
21	chr6:37211620..37213555-chr6:37282487..37284081,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000112130	Chromatin interaction
ENSG00000172738	Chromatin interaction
ENSG00000065491	Chromatin interaction

Extended variants
information (count: 92 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:92)

rs_ID	r²[population]
rs11752265	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11970265	0.91[YRI][hapmap]
rs1224289	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1224384	0.82[ASN][1000 genomes]
rs149703	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs149704	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs149705	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs149706	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs149707	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs149708	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs149710	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs149711	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs149712	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs149714	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs149715	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs149716	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs149718	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1564502	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs166394	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17572438	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs195370	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs195372	0.95[ASN][1000 genomes]
rs195412	0.95[ASN][1000 genomes]
rs195421	1.00[CEU][hapmap];0.95[YRI][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs195422	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs195423	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs195424	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs195425	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs195426	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs195427	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs195742	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs195743	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs195744	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs195745	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs195747	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs195748	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs195750	0.98[ASN][1000 genomes]
rs195751	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs195752	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs195753	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs195754	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs195755	0.84[AMR][1000 genomes]
rs195756	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs195757	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs195758	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs195759	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs195761	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs195762	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs195763	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2008782	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2144408	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2295244	1.00[JPT][hapmap]
rs2622884	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2622892	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2622900	1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs262899	1.00[JPT][hapmap]
rs262920	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs262922	0.87[ASN][1000 genomes]
rs262923	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs262924	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs262925	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs262939	1.00[JPT][hapmap]
rs262942	1.00[JPT][hapmap]
rs2748332	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2842618	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs398739	0.82[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs410183	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs410193	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs410711	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41272216	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4143230	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs418343	0.95[ASN][1000 genomes]
rs425267	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs437956	0.83[ASN][1000 genomes]
rs441745	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs446344	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4711491	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4711492	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4714054	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4714056	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs517672	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60979150	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61357257	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6457985	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6457986	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6911196	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6917404	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6917722	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7760945	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7761532	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7775913	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9470546	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37251000-37283800	Weak transcription	Hela-S3	cervix
2	chr6:37253000-37284600	Weak transcription	Stomach Mucosa	stomach
3	chr6:37261600-37286000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr6:37265600-37283200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr6:37271200-37283600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr6:37271800-37285600	Weak transcription	Small Intestine	intestine
7	chr6:37273400-37285400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr6:37274600-37287000	Weak transcription	HMEC	breast
9	chr6:37276400-37285000	Weak transcription	Right Atrium	heart
10	chr6:37277600-37284800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr6:37277600-37298600	Weak transcription	Psoas Muscle	Psoas
12	chr6:37279200-37290000	Strong transcription	Liver	Liver
13	chr6:37279400-37291400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
14	chr6:37279400-37292400	Strong transcription	Primary T cells from cord blood	blood
15	chr6:37279600-37287600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr6:37279600-37289600	Strong transcription	Placenta	Placenta
17	chr6:37279600-37291000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr6:37279600-37291400	Strong transcription	Primary T helper cells fromperipheralblood	blood
19	chr6:37279800-37283200	Weak transcription	HUVEC	blood vessel
20	chr6:37279800-37290000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
21	chr6:37279800-37292400	Strong transcription	Monocytes-CD14+_RO01746	blood
22	chr6:37280000-37283600	Weak transcription	NHDF-Ad	bronchial
23	chr6:37280000-37284000	Weak transcription	Brain Substantia Nigra	brain
24	chr6:37280000-37291200	Strong transcription	Fetal Muscle Leg	muscle
25	chr6:37280000-37291600	Strong transcription	Thymus	Thymus
26	chr6:37280000-37292800	Strong transcription	Primary neutrophils fromperipheralblood	blood
27	chr6:37280000-37292800	Strong transcription	Dnd41	blood
28	chr6:37280200-37283400	Strong transcription	Fetal Muscle Trunk	muscle
29	chr6:37280200-37286200	Strong transcription	HSMMtube	muscle
30	chr6:37280200-37287000	Strong transcription	Cortex derived primary cultured neurospheres	brain
31	chr6:37280200-37287200	Strong transcription	Primary T helper naive cells from peripheral blood	blood
32	chr6:37280200-37288600	Strong transcription	Stomach Smooth Muscle	stomach
33	chr6:37280200-37290000	Strong transcription	HUES64 Cell Line	embryonic stem cell
34	chr6:37280200-37290600	Strong transcription	Adipose Nuclei	Adipose
35	chr6:37280200-37290800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
36	chr6:37280200-37291000	Strong transcription	HUES6 Cell Line	embryonic stem cell
37	chr6:37280200-37291400	Strong transcription	Primary T cells fromperipheralblood	blood
38	chr6:37280400-37283600	Strong transcription	GM12878-XiMat	blood
39	chr6:37280400-37284000	Strong transcription	Brain Anterior Caudate	brain
40	chr6:37280400-37286400	Strong transcription	Brain Germinal Matrix	brain
41	chr6:37280400-37287200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr6:37280400-37287800	Strong transcription	H9 Cell Line	embryonic stem cell
43	chr6:37280400-37289600	Strong transcription	iPS-15b Cell Line	embryonic stem cell
44	chr6:37280400-37289600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr6:37280400-37290800	Strong transcription	Duodenum Mucosa	Duodenum
46	chr6:37280400-37290800	Strong transcription	Lung	lung
47	chr6:37280400-37290800	Strong transcription	Rectal Mucosa Donor 29	rectum
48	chr6:37280400-37290800	Strong transcription	Skeletal Muscle Male	skeletal muscle
49	chr6:37280400-37291000	Strong transcription	Fetal Stomach	stomach
50	chr6:37280600-37283400	Weak transcription	Placenta Amnion	Placenta Amnion

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