Variant report

Variant	rs262922
Chromosome Location	chr6:37213637-37213638
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:37211385..37215583-chr6:37273118..37274985,3	K562	blood:
2	chr6:37212455..37214067-chr6:37214787..37216601,2	K562	blood:
3	chr6:37212231..37214830-chr6:37214873..37217390,2	MCF-7	breast:
4	chr6:37207776..37210309-chr6:37211677..37216303,5	K562	blood:
5	chr6:37211126..37214044-chr6:37224298..37228188,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000065491	Chromatin interaction
ENSG00000172738	Chromatin interaction

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs1224289	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs149702	0.87[ASN][1000 genomes]
rs149703	0.87[ASN][1000 genomes]
rs149704	0.87[ASN][1000 genomes]
rs149705	0.87[ASN][1000 genomes]
rs149706	0.87[ASN][1000 genomes]
rs149707	0.87[ASN][1000 genomes]
rs149708	0.87[ASN][1000 genomes]
rs149710	0.87[ASN][1000 genomes]
rs149711	0.87[ASN][1000 genomes]
rs149712	0.87[ASN][1000 genomes]
rs149714	0.83[ASN][1000 genomes]
rs149715	0.87[ASN][1000 genomes]
rs149716	0.87[ASN][1000 genomes]
rs149718	0.87[ASN][1000 genomes]
rs1564502	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs166394	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17572438	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs195370	0.83[ASN][1000 genomes]
rs195372	0.83[ASN][1000 genomes]
rs195412	0.83[ASN][1000 genomes]
rs195421	0.87[ASN][1000 genomes]
rs195422	0.87[ASN][1000 genomes]
rs195423	0.87[ASN][1000 genomes]
rs195424	0.87[ASN][1000 genomes]
rs195425	0.87[ASN][1000 genomes]
rs195426	0.87[ASN][1000 genomes]
rs195427	0.87[ASN][1000 genomes]
rs195742	0.87[ASN][1000 genomes]
rs195743	0.83[ASN][1000 genomes]
rs195744	0.83[ASN][1000 genomes]
rs195745	0.85[ASN][1000 genomes]
rs195747	0.81[ASN][1000 genomes]
rs195748	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs195750	0.85[ASN][1000 genomes]
rs195751	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs195752	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs195753	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs195754	0.85[ASN][1000 genomes]
rs195756	0.87[ASN][1000 genomes]
rs195757	0.87[ASN][1000 genomes]
rs195759	0.87[ASN][1000 genomes]
rs195761	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs195762	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs195763	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2008782	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2144408	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2622884	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2622892	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2622900	0.83[ASN][1000 genomes]
rs262920	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs262923	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs262924	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs262925	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2748332	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2842618	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs398739	0.83[ASN][1000 genomes]
rs410711	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs41272216	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4143230	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs418343	0.83[ASN][1000 genomes]
rs425267	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs441745	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs446344	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4711491	0.87[ASN][1000 genomes]
rs4711492	0.87[ASN][1000 genomes]
rs4714054	0.87[ASN][1000 genomes]
rs4714056	0.87[ASN][1000 genomes]
rs517672	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs60979150	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61357257	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6457985	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6457986	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6911196	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6917404	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6917722	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7760945	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7761532	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7775913	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9470546	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37206200-37214800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr6:37207600-37214800	Enhancers	Fetal Muscle Leg	muscle
3	chr6:37208000-37214600	Enhancers	Skeletal Muscle Female	skeletal muscle
4	chr6:37209400-37214000	Weak transcription	Dnd41	blood
5	chr6:37209800-37214200	Enhancers	Left Ventricle	heart
6	chr6:37209800-37214400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr6:37210000-37214400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr6:37210600-37214400	Enhancers	HSMMtube	muscle
9	chr6:37210800-37214800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr6:37211000-37214400	Enhancers	Fetal Kidney	kidney
11	chr6:37211000-37214600	Enhancers	NH-A	brain
12	chr6:37211200-37214400	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr6:37211400-37213800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr6:37211400-37214800	Enhancers	Fetal Muscle Trunk	muscle
15	chr6:37211800-37214000	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr6:37211800-37214200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr6:37211800-37214400	Enhancers	NHLF	lung
18	chr6:37212600-37214800	Enhancers	K562	blood
19	chr6:37212600-37215000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr6:37212800-37214200	Enhancers	Spleen	Spleen
21	chr6:37212800-37214800	Enhancers	Ovary	ovary
22	chr6:37213000-37214400	Enhancers	Right Atrium	heart
23	chr6:37213200-37214400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr6:37213200-37214400	Enhancers	Hela-S3	cervix
25	chr6:37213400-37214400	Enhancers	Liver	Liver
26	chr6:37213400-37214600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr6:37213400-37215000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr6:37213400-37215000	Enhancers	Osteobl	bone
29	chr6:37213400-37215200	Enhancers	NHDF-Ad	bronchial
30	chr6:37213400-37218800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr6:37213400-37224800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr6:37213400-37225600	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chr6:37213600-37214000	Weak transcription	Fetal Stomach	stomach
34	chr6:37213600-37218600	Weak transcription	HUVEC	blood vessel

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