Variant report

Variant	rs4711492
Chromosome Location	chr6:37293545-37293546
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:37281610..37286621-chr6:37292182..37294312,4	K562	blood:
2	chr6:37293251..37294171-chr6:37534349..37535116,2	K562	blood:
3	chr6:37293159..37294156-chr6:37349193..37350038,5	MCF-7	breast:
4	chr6:37271739..37272356-chr6:37293280..37294081,2	MCF-7	breast:
5	chr6:37293289..37294121-chr6:37533832..37534578,2	MCF-7	breast:
6	chr6:37292262..37295189-chr6:37320121..37324170,4	K562	blood:
7	chr6:37286882..37290245-chr6:37291782..37293649,3	K562	blood:
8	chr6:37281296..37284244-chr6:37292284..37294312,2	K562	blood:
9	chr6:37292183..37294641-chr6:37349694..37352323,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000112130	Chromatin interaction

Extended variants
information (count: 87 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:87)

rs_ID	r²[population]
rs11752265	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1224289	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1224384	0.82[ASN][1000 genomes]
rs149702	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs149703	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs149704	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs149705	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs149706	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs149707	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs149708	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs149710	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs149711	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs149712	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs149714	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs149715	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs149716	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs149718	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1564502	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs166394	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17572438	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs195370	0.95[ASN][1000 genomes]
rs195372	0.95[ASN][1000 genomes]
rs195412	0.95[ASN][1000 genomes]
rs195421	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs195422	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs195423	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs195424	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs195425	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs195426	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs195427	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs195742	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs195743	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs195744	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs195745	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs195747	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs195748	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs195750	0.98[ASN][1000 genomes]
rs195751	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs195752	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs195753	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs195754	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs195755	0.83[AMR][1000 genomes]
rs195756	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs195757	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs195758	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs195759	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs195761	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs195762	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs195763	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2008782	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2144408	1.00[ASN][1000 genomes]
rs2622884	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2622892	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2622900	0.95[ASN][1000 genomes]
rs262920	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs262922	0.87[ASN][1000 genomes]
rs262923	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs262924	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs262925	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2748332	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2842618	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs398739	0.95[ASN][1000 genomes]
rs410183	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs410193	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs410711	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41272216	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4143230	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs418343	0.95[ASN][1000 genomes]
rs425267	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs437956	0.83[ASN][1000 genomes]
rs441745	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs446344	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4711491	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4714054	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4714056	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs517672	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60979150	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61357257	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6457985	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6457986	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6911196	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6917404	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6917722	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7760945	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7761532	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7775913	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9470546	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37277600-37298600	Weak transcription	Psoas Muscle	Psoas
2	chr6:37285000-37298200	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr6:37285000-37298600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr6:37286000-37298600	Weak transcription	Brain Substantia Nigra	brain
5	chr6:37286000-37298800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr6:37286000-37299000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr6:37286200-37298800	Weak transcription	Small Intestine	intestine
8	chr6:37286400-37298600	Weak transcription	Brain Cingulate Gyrus	brain
9	chr6:37286600-37299400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr6:37287200-37297600	Weak transcription	Esophagus	oesophagus
11	chr6:37287200-37301000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr6:37287200-37302000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr6:37287400-37293800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr6:37287800-37298600	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr6:37287800-37298800	Weak transcription	Pancreas	Pancrea
16	chr6:37288000-37297800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr6:37288000-37298600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
18	chr6:37288000-37298800	Weak transcription	Brain Angular Gyrus	brain
19	chr6:37288200-37301200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
20	chr6:37288600-37298800	Weak transcription	Aorta	Aorta
21	chr6:37288600-37298800	Weak transcription	Right Ventricle	heart
22	chr6:37288600-37301600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr6:37289000-37298600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr6:37289400-37300800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr6:37289600-37297000	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr6:37289600-37298600	Weak transcription	Placenta	Placenta
27	chr6:37289600-37298600	Weak transcription	Gastric	stomach
28	chr6:37289600-37298800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr6:37289800-37296600	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr6:37289800-37297000	Weak transcription	HUES48 Cell Line	embryonic stem cell
31	chr6:37289800-37297200	Weak transcription	Primary hematopoietic stem cells	blood
32	chr6:37289800-37298400	Weak transcription	Primary T helper cells PMA-I stimulated	--
33	chr6:37289800-37298400	Weak transcription	Brain Hippocampus Middle	brain
34	chr6:37290000-37299000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
35	chr6:37290200-37298200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
36	chr6:37290600-37297000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr6:37290600-37298400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
38	chr6:37290600-37302800	Weak transcription	Primary B cells from cord blood	blood
39	chr6:37290800-37296600	Weak transcription	Skeletal Muscle Male	skeletal muscle
40	chr6:37290800-37297200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
41	chr6:37290800-37298600	Weak transcription	Primary B cells from peripheral blood	blood
42	chr6:37290800-37298600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
43	chr6:37290800-37298800	Weak transcription	Lung	lung
44	chr6:37291000-37297000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr6:37291000-37297200	Weak transcription	HUES6 Cell Line	embryonic stem cell
46	chr6:37291000-37298600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr6:37291000-37298600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
48	chr6:37291200-37298400	Weak transcription	Spleen	Spleen
49	chr6:37291200-37298600	Weak transcription	Fetal Muscle Trunk	muscle
50	chr6:37291400-37293600	Enhancers	Fetal Intestine Large	intestine

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