Variant report

Variant	rs1224384
Chromosome Location	chr6:37195130-37195131
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:37194522..37196896-chr6:37200156..37202397,2	K562	blood:
2	chr6:37194555..37197049-chr6:37224937..37227686,3	K562	blood:
3	chr6:37194643..37196896-chr6:37198311..37201656,3	K562	blood:
4	chr6:37179975..37181475-chr6:37194600..37196173,2	K562	blood:
5	chr6:37189035..37191912-chr6:37193336..37196245,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000172738	Chromatin interaction
ENSG00000065491	Chromatin interaction

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs1150787	0.85[ASN][1000 genomes]
rs1150790	0.87[ASN][1000 genomes]
rs1224289	0.82[ASN][1000 genomes]
rs1224328	0.85[ASN][1000 genomes]
rs1224329	0.87[ASN][1000 genomes]
rs149702	0.82[ASN][1000 genomes]
rs149703	0.82[ASN][1000 genomes]
rs149704	0.82[ASN][1000 genomes]
rs149705	0.82[ASN][1000 genomes]
rs149706	0.82[ASN][1000 genomes]
rs149707	0.82[ASN][1000 genomes]
rs149708	0.82[ASN][1000 genomes]
rs149710	0.82[ASN][1000 genomes]
rs149711	0.82[ASN][1000 genomes]
rs149712	0.82[ASN][1000 genomes]
rs149715	0.82[ASN][1000 genomes]
rs149716	0.82[ASN][1000 genomes]
rs149718	0.82[ASN][1000 genomes]
rs166394	0.82[ASN][1000 genomes]
rs17572438	0.82[ASN][1000 genomes]
rs195421	0.82[ASN][1000 genomes]
rs195422	0.82[ASN][1000 genomes]
rs195423	0.82[ASN][1000 genomes]
rs195424	0.82[ASN][1000 genomes]
rs195425	0.82[ASN][1000 genomes]
rs195426	0.82[ASN][1000 genomes]
rs195427	0.82[ASN][1000 genomes]
rs195742	0.82[ASN][1000 genomes]
rs195748	0.82[ASN][1000 genomes]
rs195750	0.84[ASN][1000 genomes]
rs195751	0.82[ASN][1000 genomes]
rs195752	0.82[ASN][1000 genomes]
rs195753	0.82[ASN][1000 genomes]
rs195756	0.82[ASN][1000 genomes]
rs195757	0.82[ASN][1000 genomes]
rs195759	0.82[ASN][1000 genomes]
rs195761	0.82[ASN][1000 genomes]
rs195762	0.82[ASN][1000 genomes]
rs195763	0.82[ASN][1000 genomes]
rs2008782	0.82[ASN][1000 genomes]
rs2144408	0.82[ASN][1000 genomes]
rs2622884	0.82[ASN][1000 genomes]
rs2622892	0.82[ASN][1000 genomes]
rs2622900	0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs262920	0.82[ASN][1000 genomes]
rs262923	0.82[ASN][1000 genomes]
rs262924	0.82[ASN][1000 genomes]
rs262925	0.82[ASN][1000 genomes]
rs262939	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs262940	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs262942	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2748332	0.82[ASN][1000 genomes]
rs2842618	0.82[ASN][1000 genomes]
rs398739	0.86[ASN][1000 genomes]
rs410711	0.82[ASN][1000 genomes]
rs41272216	0.82[ASN][1000 genomes]
rs4143230	0.82[ASN][1000 genomes]
rs418343	0.86[ASN][1000 genomes]
rs425267	0.82[ASN][1000 genomes]
rs437956	0.83[AMR][1000 genomes]
rs438802	0.83[EUR][1000 genomes]
rs441745	0.82[ASN][1000 genomes]
rs446344	0.82[ASN][1000 genomes]
rs4711491	0.82[ASN][1000 genomes]
rs4711492	0.82[ASN][1000 genomes]
rs4714054	0.82[ASN][1000 genomes]
rs4714056	0.82[ASN][1000 genomes]
rs517672	0.82[ASN][1000 genomes]
rs60979150	0.82[ASN][1000 genomes]
rs61357257	0.82[ASN][1000 genomes]
rs6457985	0.82[ASN][1000 genomes]
rs6911196	0.82[ASN][1000 genomes]
rs6917404	0.82[ASN][1000 genomes]
rs6917722	0.82[ASN][1000 genomes]
rs7760945	0.82[ASN][1000 genomes]
rs7761532	0.82[ASN][1000 genomes]
rs7775913	0.82[ASN][1000 genomes]
rs9470546	0.82[ASN][1000 genomes]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37191200-37199800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr6:37191400-37196800	Weak transcription	HepG2	liver
3	chr6:37191400-37207400	Weak transcription	Dnd41	blood
4	chr6:37191400-37207600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr6:37194000-37197600	Weak transcription	K562	blood

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