Variant report

Variant	rs149716
Chromosome Location	chr6:37288036-37288037
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:37286882..37290245-chr6:37291782..37293649,3	K562	blood:
2	chr6:37269968..37271528-chr6:37287262..37289720,2	MCF-7	breast:

Extended variants
information (count: 87 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:87)

rs_ID	r²[population]
rs11752265	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1224289	0.82[CEU][hapmap];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1224384	0.82[ASN][1000 genomes]
rs149702	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs149703	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs149704	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs149705	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs149706	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs149707	0.82[CEU][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs149708	0.82[CEU][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs149710	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs149711	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs149712	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs149714	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs149715	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs149718	0.82[CEU][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1564502	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs166394	0.82[CEU][hapmap];1.00[ASN][1000 genomes]
rs17572438	0.81[CEU][hapmap];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs195370	0.95[ASN][1000 genomes]
rs195372	0.95[ASN][1000 genomes]
rs195412	0.95[ASN][1000 genomes]
rs195421	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs195422	0.82[CEU][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs195423	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs195424	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs195425	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs195426	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs195427	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs195742	0.82[CEU][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs195743	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs195744	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs195745	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs195747	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs195748	0.82[CEU][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs195750	0.98[ASN][1000 genomes]
rs195751	0.82[CEU][hapmap];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs195752	0.82[CEU][hapmap];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs195753	0.82[CEU][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs195754	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs195755	0.83[AMR][1000 genomes]
rs195756	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs195757	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs195758	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs195759	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs195761	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs195762	0.83[CEU][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs195763	0.82[CEU][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2008782	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2144408	1.00[ASN][1000 genomes]
rs2622884	1.00[ASN][1000 genomes]
rs2622892	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2622900	0.95[ASN][1000 genomes]
rs262920	0.90[CEU][hapmap];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs262922	0.87[ASN][1000 genomes]
rs262923	0.83[CEU][hapmap];1.00[ASN][1000 genomes]
rs262924	0.82[CEU][hapmap];1.00[ASN][1000 genomes]
rs262925	0.82[CEU][hapmap];1.00[ASN][1000 genomes]
rs2748332	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2842618	1.00[ASN][1000 genomes]
rs398739	0.95[ASN][1000 genomes]
rs410183	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs410193	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs410711	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41272216	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4143230	0.83[CEU][hapmap];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs418343	0.95[ASN][1000 genomes]
rs425267	0.82[CEU][hapmap];1.00[ASN][1000 genomes]
rs437956	0.83[ASN][1000 genomes]
rs441745	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs446344	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4711491	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4711492	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4714054	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4714056	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs517672	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60979150	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61357257	1.00[ASN][1000 genomes]
rs6457985	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6457986	0.82[CEU][hapmap];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6911196	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6917404	0.82[CEU][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6917722	0.82[CEU][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7760945	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7761532	0.82[CEU][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7775913	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9470546	0.82[CEU][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37277600-37298600	Weak transcription	Psoas Muscle	Psoas
2	chr6:37279200-37290000	Strong transcription	Liver	Liver
3	chr6:37279400-37291400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
4	chr6:37279400-37292400	Strong transcription	Primary T cells from cord blood	blood
5	chr6:37279600-37289600	Strong transcription	Placenta	Placenta
6	chr6:37279600-37291000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr6:37279600-37291400	Strong transcription	Primary T helper cells fromperipheralblood	blood
8	chr6:37279800-37290000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
9	chr6:37279800-37292400	Strong transcription	Monocytes-CD14+_RO01746	blood
10	chr6:37280000-37291200	Strong transcription	Fetal Muscle Leg	muscle
11	chr6:37280000-37291600	Strong transcription	Thymus	Thymus
12	chr6:37280000-37292800	Strong transcription	Primary neutrophils fromperipheralblood	blood
13	chr6:37280000-37292800	Strong transcription	Dnd41	blood
14	chr6:37280200-37288600	Strong transcription	Stomach Smooth Muscle	stomach
15	chr6:37280200-37290000	Strong transcription	HUES64 Cell Line	embryonic stem cell
16	chr6:37280200-37290600	Strong transcription	Adipose Nuclei	Adipose
17	chr6:37280200-37290800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr6:37280200-37291000	Strong transcription	HUES6 Cell Line	embryonic stem cell
19	chr6:37280200-37291400	Strong transcription	Primary T cells fromperipheralblood	blood
20	chr6:37280400-37289600	Strong transcription	iPS-15b Cell Line	embryonic stem cell
21	chr6:37280400-37289600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr6:37280400-37290800	Strong transcription	Duodenum Mucosa	Duodenum
23	chr6:37280400-37290800	Strong transcription	Lung	lung
24	chr6:37280400-37290800	Strong transcription	Rectal Mucosa Donor 29	rectum
25	chr6:37280400-37290800	Strong transcription	Skeletal Muscle Male	skeletal muscle
26	chr6:37280400-37291000	Strong transcription	Fetal Stomach	stomach
27	chr6:37280600-37288600	Strong transcription	Aorta	Aorta
28	chr6:37280600-37288800	Strong transcription	HepG2	liver
29	chr6:37280600-37289600	Strong transcription	Primary B cells from peripheral blood	blood
30	chr6:37280600-37289800	Strong transcription	HUES48 Cell Line	embryonic stem cell
31	chr6:37280600-37289800	Strong transcription	Sigmoid Colon	Sigmoid Colon
32	chr6:37280600-37290800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chr6:37280600-37291000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr6:37280600-37291200	Strong transcription	Fetal Intestine Small	intestine
35	chr6:37280600-37291200	Strong transcription	Spleen	Spleen
36	chr6:37280600-37291400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr6:37280600-37291400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
38	chr6:37280600-37291600	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr6:37280600-37292000	Strong transcription	H1 Cell Line	embryonic stem cell
40	chr6:37280800-37289400	Strong transcription	Fetal Intestine Large	intestine
41	chr6:37280800-37289600	Strong transcription	Rectal Smooth Muscle	rectum
42	chr6:37280800-37289600	Strong transcription	Skeletal Muscle Female	skeletal muscle
43	chr6:37280800-37290600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr6:37280800-37290600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
45	chr6:37281000-37289200	Strong transcription	Duodenum Smooth Muscle	Duodenum
46	chr6:37281200-37289400	Strong transcription	Primary B cells from cord blood	blood
47	chr6:37281400-37290200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
48	chr6:37281400-37290800	Strong transcription	Rectal Mucosa Donor 31	rectum
49	chr6:37281800-37289000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr6:37282800-37293000	Strong transcription	Fetal Thymus	thymus

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