Variant report

Variant	rs398739
Chromosome Location	chr6:37199880-37199881
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:37197805..37200451-chr6:37282782..37284455,2	K562	blood:
2	chr6:37194643..37196896-chr6:37198311..37201656,3	K562	blood:

Extended variants
information (count: 89 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:89)

rs_ID	r²[population]
rs1224289	0.82[CHB][hapmap];0.83[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs1224384	0.86[ASN][1000 genomes]
rs149702	0.82[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs149703	0.95[ASN][1000 genomes]
rs149704	0.82[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs149705	0.82[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs149706	0.95[ASN][1000 genomes]
rs149707	0.82[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs149708	0.82[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs149710	0.82[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs149711	0.82[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs149712	0.82[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs149714	0.91[ASN][1000 genomes]
rs149715	0.95[ASN][1000 genomes]
rs149716	0.95[ASN][1000 genomes]
rs149718	0.82[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs1564502	0.93[ASN][1000 genomes]
rs166394	0.82[CHB][hapmap];0.92[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs17572438	0.82[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs195370	0.82[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs195372	0.91[ASN][1000 genomes]
rs195412	0.91[ASN][1000 genomes]
rs195421	0.95[ASN][1000 genomes]
rs195422	0.82[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs195423	0.82[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs195424	0.82[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs195425	0.82[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs195426	0.82[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs195427	0.82[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs195742	0.82[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs195743	0.91[ASN][1000 genomes]
rs195744	0.91[ASN][1000 genomes]
rs195745	0.93[ASN][1000 genomes]
rs195747	0.82[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs195748	0.82[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs195750	0.93[ASN][1000 genomes]
rs195751	0.82[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs195752	0.82[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs195753	0.82[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs195754	0.82[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs195756	0.82[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs195757	0.95[ASN][1000 genomes]
rs195758	0.85[ASN][1000 genomes]
rs195759	0.82[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs195761	0.82[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs195762	0.82[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs195763	0.82[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs2008782	0.82[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs2144408	0.82[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs2295244	1.00[JPT][hapmap]
rs2622884	0.82[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs2622892	0.82[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs2622900	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs262899	0.92[CEU][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap];0.83[YRI][hapmap];0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs262920	0.82[CHB][hapmap];0.92[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs262922	0.83[ASN][1000 genomes]
rs262923	0.82[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.95[ASN][1000 genomes]
rs262924	0.82[CHB][hapmap];0.92[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs262925	0.82[CHB][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.89[MKK][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs262939	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs262940	0.82[ASN][1000 genomes]
rs262942	0.82[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs2748332	0.95[ASN][1000 genomes]
rs2842618	0.82[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.86[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs410193	0.81[ASN][1000 genomes]
rs410711	0.82[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs41272216	0.95[ASN][1000 genomes]
rs4143230	0.82[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs418343	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs425267	0.82[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs437956	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs441745	0.82[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs446344	0.82[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs4711491	0.95[ASN][1000 genomes]
rs4711492	0.95[ASN][1000 genomes]
rs4714054	0.95[ASN][1000 genomes]
rs4714056	0.82[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs517672	0.82[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs60979150	0.95[ASN][1000 genomes]
rs61357257	0.95[ASN][1000 genomes]
rs6457985	0.95[ASN][1000 genomes]
rs6457986	0.82[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs6911196	0.95[ASN][1000 genomes]
rs6917404	0.82[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.95[ASN][1000 genomes]
rs6917722	0.82[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7760945	0.95[ASN][1000 genomes]
rs7761532	0.82[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7775913	0.95[ASN][1000 genomes]
rs9470546	0.82[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs398739	RNF8	cis	cerebellum	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37191400-37207400	Weak transcription	Dnd41	blood
2	chr6:37191400-37207600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr6:37198000-37204200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr6:37198200-37200000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr6:37198600-37200600	Weak transcription	Fetal Intestine Large	intestine
6	chr6:37199600-37201000	Flanking Active TSS	K562	blood
7	chr6:37199800-37200400	Enhancers	Primary hematopoietic stem cells short term culture	blood

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