Variant report

Variant	rs195421
Chromosome Location	chr6:37292786-37292787
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:37281610..37286621-chr6:37292182..37294312,4	K562	blood:
2	chr6:37292262..37295189-chr6:37320121..37324170,4	K562	blood:
3	chr6:37286882..37290245-chr6:37291782..37293649,3	K562	blood:
4	chr6:37290599..37292900-chr6:37390289..37392598,3	K562	blood:
5	chr6:37281296..37284244-chr6:37292284..37294312,2	K562	blood:
6	chr6:37292183..37294641-chr6:37349694..37352323,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000112130	Chromatin interaction

Extended variants
information (count: 87 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:87)

rs_ID	r²[population]
rs11752265	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11970265	0.90[YRI][hapmap]
rs1224289	0.89[CEU][hapmap];1.00[YRI][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1224384	0.82[ASN][1000 genomes]
rs149702	1.00[CEU][hapmap];0.95[YRI][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs149703	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs149704	1.00[CEU][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs149705	0.91[CEU][hapmap];0.86[YRI][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs149706	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs149707	1.00[CEU][hapmap];0.90[YRI][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs149708	1.00[CEU][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs149710	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs149711	1.00[CEU][hapmap];0.95[YRI][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs149712	1.00[CEU][hapmap];0.91[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs149714	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs149715	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs149716	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs149718	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1564502	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs166394	0.89[CEU][hapmap];1.00[ASN][1000 genomes]
rs17572438	0.88[CEU][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs195370	0.80[CEU][hapmap];0.95[ASN][1000 genomes]
rs195372	0.95[ASN][1000 genomes]
rs195412	0.95[ASN][1000 genomes]
rs195422	1.00[CEU][hapmap];0.90[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs195423	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs195424	1.00[CEU][hapmap];0.95[YRI][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs195425	1.00[CEU][hapmap];0.91[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs195426	1.00[CEU][hapmap];0.91[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs195427	1.00[CEU][hapmap];0.87[YRI][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs195742	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs195743	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs195744	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs195745	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs195747	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs195748	0.89[CEU][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs195750	0.98[ASN][1000 genomes]
rs195751	0.89[CEU][hapmap];0.91[YRI][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs195752	0.89[CEU][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs195753	0.89[CEU][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs195754	1.00[CEU][hapmap];0.91[YRI][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs195756	1.00[CEU][hapmap];0.87[YRI][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs195757	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs195758	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs195759	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs195761	0.90[CEU][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs195762	1.00[CEU][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs195763	0.89[CEU][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2008782	0.90[CEU][hapmap];0.87[YRI][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2144408	0.86[CEU][hapmap];1.00[ASN][1000 genomes]
rs2622884	0.90[CEU][hapmap];1.00[ASN][1000 genomes]
rs2622892	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2622900	0.95[ASN][1000 genomes]
rs262920	0.89[CEU][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs262922	0.87[ASN][1000 genomes]
rs262923	0.90[CEU][hapmap];1.00[ASN][1000 genomes]
rs262924	0.89[CEU][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs262925	0.89[CEU][hapmap];1.00[ASN][1000 genomes]
rs2748332	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2842618	0.90[CEU][hapmap];1.00[ASN][1000 genomes]
rs398739	0.95[ASN][1000 genomes]
rs410183	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs410193	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs410711	0.90[CEU][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41272216	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4143230	0.90[CEU][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs418343	0.95[ASN][1000 genomes]
rs425267	0.89[CEU][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs437956	0.83[ASN][1000 genomes]
rs441745	0.90[CEU][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs446344	0.89[CEU][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4711491	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4711492	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4714054	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4714056	1.00[CEU][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs517672	0.90[CEU][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60979150	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61357257	1.00[ASN][1000 genomes]
rs6457985	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6457986	0.89[CEU][hapmap];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6911196	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6917404	0.89[CEU][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6917722	0.89[CEU][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7760945	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7761532	0.89[CEU][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7775913	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9470546	0.89[CEU][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37277600-37298600	Weak transcription	Psoas Muscle	Psoas
2	chr6:37280000-37292800	Strong transcription	Primary neutrophils fromperipheralblood	blood
3	chr6:37280000-37292800	Strong transcription	Dnd41	blood
4	chr6:37282800-37293000	Strong transcription	Fetal Thymus	thymus
5	chr6:37285000-37298200	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr6:37285000-37298600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr6:37286000-37298600	Weak transcription	Brain Substantia Nigra	brain
8	chr6:37286000-37298800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr6:37286000-37299000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr6:37286200-37298800	Weak transcription	Small Intestine	intestine
11	chr6:37286400-37298600	Weak transcription	Brain Cingulate Gyrus	brain
12	chr6:37286600-37299400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr6:37287200-37297600	Weak transcription	Esophagus	oesophagus
14	chr6:37287200-37301000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr6:37287200-37302000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
16	chr6:37287400-37293800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr6:37287800-37293400	Enhancers	Cortex derived primary cultured neurospheres	brain
18	chr6:37287800-37298600	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr6:37287800-37298800	Weak transcription	Pancreas	Pancrea
20	chr6:37288000-37297800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
21	chr6:37288000-37298600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
22	chr6:37288000-37298800	Weak transcription	Brain Angular Gyrus	brain
23	chr6:37288200-37301200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr6:37288600-37298800	Weak transcription	Aorta	Aorta
25	chr6:37288600-37298800	Weak transcription	Right Ventricle	heart
26	chr6:37288600-37301600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr6:37289000-37298600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr6:37289400-37300800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr6:37289600-37297000	Weak transcription	Skeletal Muscle Female	skeletal muscle
30	chr6:37289600-37298600	Weak transcription	Placenta	Placenta
31	chr6:37289600-37298600	Weak transcription	Gastric	stomach
32	chr6:37289600-37298800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
33	chr6:37289800-37296600	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr6:37289800-37297000	Weak transcription	HUES48 Cell Line	embryonic stem cell
35	chr6:37289800-37297200	Weak transcription	Primary hematopoietic stem cells	blood
36	chr6:37289800-37298400	Weak transcription	Primary T helper cells PMA-I stimulated	--
37	chr6:37289800-37298400	Weak transcription	Brain Hippocampus Middle	brain
38	chr6:37290000-37299000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
39	chr6:37290200-37298200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
40	chr6:37290400-37292800	Enhancers	Muscle Satellite Cultured Cells	--
41	chr6:37290600-37293200	Weak transcription	K562	blood
42	chr6:37290600-37293200	Enhancers	NHLF	lung
43	chr6:37290600-37297000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr6:37290600-37298400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
45	chr6:37290600-37302800	Weak transcription	Primary B cells from cord blood	blood
46	chr6:37290800-37292800	Enhancers	Fetal Brain Female	brain
47	chr6:37290800-37292800	Weak transcription	Rectal Mucosa Donor 29	rectum
48	chr6:37290800-37293000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr6:37290800-37293000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr6:37290800-37296600	Weak transcription	Skeletal Muscle Male	skeletal muscle

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