Variant report

Variant	rs149706
Chromosome Location	chr6:37281335-37281336
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:36843073..36845440-chr6:37281034..37282864,2	K562	blood:
2	chr6:37224984..37226897-chr6:37279789..37281744,2	K562	blood:
3	chr6:37279759..37281772-chr6:37465183..37467852,3	K562	blood:
4	chr6:37281296..37284244-chr6:37292284..37294312,2	K562	blood:
5	chr6:37239434..37242325-chr6:37280434..37282809,2	K562	blood:
6	chr6:36843073..36845711-chr6:37281034..37284112,3	K562	blood:
7	chr6:37278969..37281772-chr6:37464044..37467373,3	K562	blood:
8	chr6:37188223..37190409-chr6:37281169..37282824,2	K562	blood:
9	chr6:37207667..37210098-chr6:37279823..37281757,2	K562	blood:
10	chr6:37278426..37281348-chr6:37283112..37285978,2	MCF-7	breast:
11	chr6:37269212..37274068-chr6:37276535..37284218,11	K562	blood:

No data

Variant related genes	Relation type
ENSG00000065491	Chromatin interaction
ENSG00000172738	Chromatin interaction
ENSG00000198937	Chromatin interaction

Extended variants
information (count: 87 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:87)

rs_ID	r²[population]
rs11752265	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1224289	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1224384	0.82[ASN][1000 genomes]
rs149702	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs149703	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs149704	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs149705	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs149707	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs149708	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs149710	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs149711	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs149712	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs149714	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs149715	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs149716	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs149718	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1564502	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs166394	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17572438	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs195370	0.95[ASN][1000 genomes]
rs195372	0.95[ASN][1000 genomes]
rs195412	0.95[ASN][1000 genomes]
rs195421	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs195422	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs195423	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs195424	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs195425	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs195426	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs195427	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs195742	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs195743	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs195744	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs195745	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs195747	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs195748	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs195750	0.98[ASN][1000 genomes]
rs195751	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs195752	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs195753	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs195754	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs195755	0.84[AMR][1000 genomes]
rs195756	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs195757	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs195758	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs195759	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs195761	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs195762	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs195763	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2008782	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2144408	1.00[ASN][1000 genomes]
rs2622884	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2622892	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2622900	0.95[ASN][1000 genomes]
rs262920	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs262922	0.87[ASN][1000 genomes]
rs262923	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs262924	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs262925	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2748332	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2842618	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs398739	0.95[ASN][1000 genomes]
rs410183	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs410193	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs410711	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41272216	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4143230	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs418343	0.95[ASN][1000 genomes]
rs425267	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs437956	0.83[ASN][1000 genomes]
rs441745	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs446344	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4711491	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4711492	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4714054	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4714056	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs517672	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60979150	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61357257	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6457985	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6457986	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6911196	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6917404	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6917722	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7760945	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7761532	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7775913	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9470546	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37242000-37281400	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr6:37251000-37283800	Weak transcription	Hela-S3	cervix
3	chr6:37253000-37284600	Weak transcription	Stomach Mucosa	stomach
4	chr6:37261600-37286000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr6:37265600-37283200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr6:37271000-37281800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr6:37271200-37281400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr6:37271200-37281600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr6:37271200-37283600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr6:37271800-37285600	Weak transcription	Small Intestine	intestine
11	chr6:37272200-37281600	Weak transcription	HSMM	muscle
12	chr6:37273400-37285400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr6:37274200-37281400	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr6:37274400-37281400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
15	chr6:37274600-37287000	Weak transcription	HMEC	breast
16	chr6:37276400-37281400	Weak transcription	A549	lung
17	chr6:37276400-37281600	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr6:37276400-37285000	Weak transcription	Right Atrium	heart
19	chr6:37277600-37284800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr6:37277600-37298600	Weak transcription	Psoas Muscle	Psoas
21	chr6:37279200-37290000	Strong transcription	Liver	Liver
22	chr6:37279400-37291400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
23	chr6:37279400-37292400	Strong transcription	Primary T cells from cord blood	blood
24	chr6:37279600-37287600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr6:37279600-37289600	Strong transcription	Placenta	Placenta
26	chr6:37279600-37291000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr6:37279600-37291400	Strong transcription	Primary T helper cells fromperipheralblood	blood
28	chr6:37279800-37281400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr6:37279800-37282200	Genic enhancers	K562	blood
30	chr6:37279800-37283200	Weak transcription	HUVEC	blood vessel
31	chr6:37279800-37290000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
32	chr6:37279800-37292400	Strong transcription	Monocytes-CD14+_RO01746	blood
33	chr6:37280000-37283600	Weak transcription	NHDF-Ad	bronchial
34	chr6:37280000-37284000	Weak transcription	Brain Substantia Nigra	brain
35	chr6:37280000-37291200	Strong transcription	Fetal Muscle Leg	muscle
36	chr6:37280000-37291600	Strong transcription	Thymus	Thymus
37	chr6:37280000-37292800	Strong transcription	Primary neutrophils fromperipheralblood	blood
38	chr6:37280000-37292800	Strong transcription	Dnd41	blood
39	chr6:37280200-37281400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
40	chr6:37280200-37281400	Weak transcription	Brain Inferior Temporal Lobe	brain
41	chr6:37280200-37281800	Strong transcription	Fetal Thymus	thymus
42	chr6:37280200-37282000	Strong transcription	Primary T helper cells PMA-I stimulated	--
43	chr6:37280200-37282400	Strong transcription	Primary T killer memory cells from peripheral blood	blood
44	chr6:37280200-37282600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
45	chr6:37280200-37283400	Strong transcription	Fetal Muscle Trunk	muscle
46	chr6:37280200-37286200	Strong transcription	HSMMtube	muscle
47	chr6:37280200-37287000	Strong transcription	Cortex derived primary cultured neurospheres	brain
48	chr6:37280200-37287200	Strong transcription	Primary T helper naive cells from peripheral blood	blood
49	chr6:37280200-37288600	Strong transcription	Stomach Smooth Muscle	stomach
50	chr6:37280200-37290000	Strong transcription	HUES64 Cell Line	embryonic stem cell

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