Variant report

Variant	rs262942
Chromosome Location	chr6:37185091-37185092
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:37184182..37185860-chr6:37188093..37190495,2	K562	blood:

Extended variants
information (count: 66 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs1150787	0.89[ASN][1000 genomes]
rs1150790	0.82[CHB][hapmap];0.91[ASN][1000 genomes]
rs1224289	1.00[JPT][hapmap]
rs1224328	0.82[CHB][hapmap];0.89[ASN][1000 genomes]
rs1224329	0.82[CHB][hapmap];0.91[ASN][1000 genomes]
rs1224384	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs149702	1.00[JPT][hapmap]
rs149704	1.00[JPT][hapmap]
rs149705	1.00[JPT][hapmap]
rs149707	1.00[JPT][hapmap]
rs149708	1.00[JPT][hapmap]
rs149710	1.00[JPT][hapmap]
rs149711	1.00[JPT][hapmap]
rs149712	1.00[JPT][hapmap]
rs149718	1.00[JPT][hapmap]
rs166394	1.00[JPT][hapmap]
rs17572438	1.00[JPT][hapmap]
rs195370	1.00[JPT][hapmap]
rs195422	1.00[JPT][hapmap]
rs195423	1.00[JPT][hapmap]
rs195424	1.00[JPT][hapmap]
rs195425	1.00[JPT][hapmap]
rs195426	1.00[JPT][hapmap]
rs195427	1.00[JPT][hapmap]
rs195742	1.00[JPT][hapmap]
rs195747	1.00[JPT][hapmap]
rs195748	1.00[JPT][hapmap]
rs195751	1.00[JPT][hapmap]
rs195752	1.00[JPT][hapmap]
rs195753	1.00[JPT][hapmap]
rs195754	1.00[JPT][hapmap]
rs195756	1.00[JPT][hapmap]
rs195759	1.00[JPT][hapmap]
rs195761	1.00[JPT][hapmap]
rs195762	1.00[JPT][hapmap]
rs195763	1.00[JPT][hapmap]
rs2008782	1.00[JPT][hapmap]
rs2144408	1.00[JPT][hapmap]
rs2295244	1.00[JPT][hapmap]
rs2622884	1.00[JPT][hapmap]
rs2622892	1.00[JPT][hapmap]
rs2622900	1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs262899	1.00[JPT][hapmap]
rs262920	1.00[JPT][hapmap]
rs262923	1.00[JPT][hapmap]
rs262924	1.00[JPT][hapmap]
rs262925	1.00[JPT][hapmap]
rs262939	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs262940	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2842618	1.00[JPT][hapmap]
rs398739	0.82[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs410711	1.00[JPT][hapmap]
rs4143230	1.00[JPT][hapmap]
rs418343	0.82[ASN][1000 genomes]
rs425267	1.00[JPT][hapmap]
rs437956	0.83[AMR][1000 genomes]
rs438802	0.86[EUR][1000 genomes]
rs441745	1.00[JPT][hapmap]
rs446344	1.00[JPT][hapmap]
rs4714056	1.00[JPT][hapmap]
rs517672	1.00[JPT][hapmap]
rs6457986	1.00[JPT][hapmap]
rs6917404	1.00[JPT][hapmap]
rs6917722	1.00[JPT][hapmap]
rs7761532	1.00[JPT][hapmap]
rs9470546	1.00[JPT][hapmap]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs262942	RNF8	cis	cerebellum	SCAN
rs262942	SRPK1	cis	cerebellum	SCAN
rs262942	RNF8	cis	parietal	SCAN

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37176200-37189800	Weak transcription	Thymus	Thymus
2	chr6:37179000-37185600	Weak transcription	Dnd41	blood
3	chr6:37180200-37185400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr6:37183000-37185400	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr6:37184600-37189600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr6:37184800-37189800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr6:37185000-37185400	Weak transcription	A549	lung
8	chr6:37185000-37187600	Weak transcription	NHEK	skin

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